Accepting request 1316501 from devel:languages:R:released

Automatic submission by obs-autosubmit

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OBS-URL: https://build.opensuse.org/package/show/openSUSE:Factory/R-base?expand=0&rev=98

R-4.4.1.tar.xz

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R-4.5.2.tar.xz

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R-base.changes

@@ -1,3 +1,936 @@
+-------------------------------------------------------------------
+Fri Oct 31 22:00:24 UTC 2025 - Detlef Steuer <detlef.steuer@gmx.de>
+
+- Upstream replaced the tar.xz file due to a packaging error
+  No other changes.
+
+-------------------------------------------------------------------
+Fri Oct 31 13:28:36 UTC 2025 - Detlef Steuer <detlef.steuer@gmx.de>
+
+- CHANGES IN R 4.5.2:
+
+  UTILITIES:
+
+    • R CMD check now handles archives with extension .tar or .tar.zstd
+      (where zstd compression is supported by the R build).
+
+  BUG FIXES:
+
+    • t.test(c(1:3, Inf)) and similar no longer produce an error but
+      return a (still not so useful) "htest" result, fixing PR#18901,
+      thanks to Jesse Alderliesten.
+
+    • attr(., "tsp") <- val now uses getOption("ts.eps") instead of
+      hardwired 1e-5; consequently, ts(.., ts.eps=*) now passes ts.eps
+      to the "tsp" setting C code; both fixing a long-standing ‘FIXME’.
+
+    • insertSource() now ignores the internal .packageName object,
+      avoiding a superfluous message.
+
+    • In static HTML help, links to vignette files from the default
+      doc/index.html page now also work for packages not installed in
+      the default .Library, thanks to a report by Patrice Kiener.
+
+    • fixInNamespace("<S3method>") failed to update the S3 methods
+      table when the generic was not on the search path.
+
+    • In plain-text help (Rd2txt), an initial newline from an Rd inline
+      \eqn no longer breaks the paragraph.
+
+    • hist(*, log = "x") now works without a warning, thanks to Martin
+      Smith's PR#18921.
+
+    • Subassigning "POSIXlt", i.e., <tdat>[i] <- val and <tdat>[[i]] <-
+      val now rebalance as they should, thanks to Mikael Jagan's
+      PR#18919.
+
+    • <POSIXlt>[*] (re-)setting "balanced", fixing PR#18681 comment #7,
+      thanks to Mikael Jagan.
+
+    • All four of {col,row}{Sums,Means}(Z, na.rm=TRUE) now correctly
+      work with complex Z where is.na(Re(Z)) differs from is.na(Im(Z)),
+      fixing PR#18942, unearthed by Dirk Eddelbuettel.
+
+    • Fix for glyph rendering on the quartz() device when there is
+      other (“normal”) text drawn on the device.  The problem was that
+      the text transformation matrix was not reset so glyphs would be
+      rendered incorrectly (often completely outside the device, i.e.,
+      not visible).
+
+    • Functions install.packages() and download.packages() again
+      consult option download.file.method when the download method is
+      unspecified.
+
+    • Tanguy Barthelemy and colleagues at the ‘R Dev Day’ following
+      Rencontres R in May 2025 extended the help page of lm(), fixing
+      PR#18058.  As suggested by Thomas Soeiro, such notes were also
+      added to the glm(), poly() and splines::bs() and ns() pages.
+
+    • lbeta(1i, 1) now signals an error, as lbeta() is not implemented
+      for complex, fixing PR#18946 from Ben Bolker and Kasper
+      Kristensen.
+
+    • The Cairo-based SVG device uses pt as the default document unit
+      also with Cairo >= 1.17.8 (PR#18912).
+
+    • pretty(*, eps.correct = 2) has been fixed, e.g., to avoid over 1
+      million length result for pretty(c(0, 1e-322), eps.correct = 2).
+
+    • When "POSIXlt" date-time objects are NA-padded from subsetting or
+      increasing length in the `[` or `length<-` methods, the
+      "balanced" attribute is set to NA, now; noted in PR#18681, thanks
+      to Mikael Jagan.
+
+-------------------------------------------------------------------
+Fri Jun 13 10:59:21 UTC 2025 - Detlef Steuer <detlef.steuer@gmx.de>
+
+- CHANGES IN R 4.5.1:
+
+  NEW FEATURES:
+
+    • The internal method of unzip() now follows unzip 6.00 in how it
+      handles extracted file paths which contain "../".  With thanks to
+      Ivan Krylov.
+
+  INSTALLATION:
+
+    • Standalone nmath can be built with early-2025 versions of
+      clang-based compilers such as LLVM clang 20, Apple clang 17 and
+      Intel icx 2025.0.
+
+    • Tcl/Tk 9 can be used to build package tcltk: this has become the
+      default in some Linux distributions.  *N.B.* several third-party
+      packages currently require Tcl/Tk 8 or even 8.6 without declaring
+      so.
+
+  BUG FIXES:
+
+    • Java detection in javareconf could not detect libjvm.* in the
+      zero variant of the JDK (PR#18884).  All valid variants as of JDK
+      24u are now supported.
+
+    • factanal(.., rotation=*) now correctly updates rotmat, fixing
+      PR#18886.
+
+    • dnbinom(<large>, <muchlarger>, ..) now is 0 correctly, instead of
+      NaN or Inf sometimes.
+
+    • dbinom(<large>, n=Inf, ..) is 0 now correctly, instead of NaN
+      which also fixes many dnbinom() cases, notably those mentioned in
+      PR#16727 comment #5.
+
+    • Fixing C level “binomial deviance” bd0() for extreme arguments
+      (preventing under-/overflow) solves more PR#16727 cases and also
+      prevents some full accuracy loss in such cases for dbinom(),
+      dnbinom(), and via dbinom_raw() potentially dgeom(), dhyper(),
+      dbeta(), and df().
+
+    • signif(1.**e308, digits) no longer truncates unnecessarily (but
+      still to prevent overflow to Inf), fixing PR#18889.
+
+    • prettyNum(*, zero.print={>=1-char}, replace.zero=TRUE) now works
+      as documented, thanks to Marttila Mikko and Ivan Krylov's
+      messages on R-devel.
+
+    • pbeta(x, a,b, ..) for very large a,b no longer returns NaN but
+      the correct values (0 or 1, or their logs for log.p = TRUE).
+      This improves Mathlib's C level bratio() and hence also
+      pnbinom(), etc..
+
+-------------------------------------------------------------------
+Fri Apr 11 12:15:54 UTC 2025 - Detlef Steuer <detlef.steuer@gmx.de>
+
+- CHANGES IN R 4.5.0:
+
+  NEW FEATURES:
+
+    • as.integer(rl) and hence as.raw(rl) now work for a list of raw(1)
+      elements, as proposed by Michael Chirico's PR#18696.
+
+    • graphics' grid() gains optional argument nintLog.
+
+    • New functions check_package_urls() and check_package_dois() in
+      package tools for checking URLs and DOIs in package sources.
+
+    • New head() and tail() methods for class "ts" time series,
+      proposed by Spencer Graves on R-devel.
+
+    • New qr.influence() function, a “bare bones” interface to the
+      lm.influence() leave-one-out diagnostics computations; wished for
+      in PR#18739.
+
+    • Package citation() results auto-generated from the package
+      metadata now also provide package DOIs for CRAN and Bioconductor
+      packages.
+
+    • New function grepv() identical to grep() except for the default
+      value = TRUE.
+
+    • methods(<pkg>:::<genfun>) now does report methods when neither
+      the generic nor the methods have been exported.
+
+    • pdf() gains an author argument to set the corresponding metadata
+      field, and logical arguments timestamp and producer to optionally
+      omit the respective metadata.  (Thanks to Edzer Pebesma.)
+
+    • grDevices::glyphInfo() gains a rot argument to allow per-glyph
+      rotation.  (Thanks to Daniel Sabanes Bove.)
+
+    • Package tools now exports functions CRAN_current_db(),
+      CRAN_aliases_db(), CRAN_rdxrefs_db(), CRAN_archive_db(), and
+      CRAN_authors_db().
+
+    • Package tools now exports functions R() and
+      parse_URI_reference().
+
+    • Package tools now exports functions base_aliases_db() and
+      base_rdxrefs_db().
+
+    • It is now possible to set the background color for row and column
+      names in the data editor on Windows (Rgui).
+
+    • Rterm on Windows now accepts input lines of unlimited length.
+
+    • file.info() on Windows now provides file owner name and domain.
+
+    • Sys.info() on Windows now provides current user domain.
+
+    • findInterval() gets new arguments checkSorted and checkNA which
+      allow skipping relatively costly checks; related to PR#16567.
+
+    • pnorm(x) underflows more gracefully.
+
+    • get(nam, env) now signals a _classed_ error, "getMissingError",
+      as “subclass” of "missingArgError" where the latter is used also
+      in similar situations, e.g., f <- function(x) exp(x); try(f()) .
+
+    • The set operations now avoid the as.vector() transformation for
+      same-kind apparently vector-like operands.
+
+    • md5sum() can be used to compute an MD5 hash of a raw vector of
+      bytes by using the bytes= argument instead of files=. The two
+      arguments are mutually exclusive.
+
+    • Added function sha256sum() in package tools analogous to md5sum()
+      implementing the SHA-256 hashing algorithm.
+
+    • The xtfrm() method for class "AsIs" is now considerably faster
+      thanks to a patch provided by Ivan Krylov.
+
+    • The merge() method for data frames will no longer convert row
+      names used for indexing using I(), which will lead to faster
+      execution in cases where sort = TRUE and all.x and/or all.y are
+      set to TRUE.
+
+    • The methods package internal function .requirePackage() now calls
+      requireNamespace(p) instead of require(p), hence no longer adding
+      packages to the search() path in cases methods or class
+      definitions are needed.  Consequently, previous workflows relying
+      on the old behaviour will have to be amended by adding
+      corresponding library(p) calls.
+
+    • More R-level messages use a common format containing "character
+      string" for more consistency and less translation work.
+
+    • available.packages() and install.packages() get an optional
+      switch cache_user_dir, somewhat experimentally.
+
+    • The sunspot.month data have been updated to Oct 2024; because of
+      recalibration also historical numbers are changed, and we keep
+      the previous data as sunspot.m2014 for reproducibility.
+
+    • The quartz() device now supports alpha masks.  Thanks to George
+      Stagg, Gwynn Gebeyhu, Heather Turner, and Tomek Gieorgijewski.
+
+    • The print() method for date-time objects (POSIX.t) gets an
+      optional digits argument for _fractional_ seconds, passed to
+      improved format.POSIXlt(); consequently, print(<date.time>,
+      digits = n) allows to print fractions of seconds.
+
+    • install.packages() and download.packages() download packages
+      simultaneously using libcurl, significantly reducing download
+      times when installing or downloading multiple packages.
+
+    • Status reporting in download.file() has been extended to report
+      the outcome for individual files in simultaneous downloads.
+
+    • The Rd \link macro now allows markup in the link text when the
+      topic is given by the optional argument, e.g.,
+      \link[=gamma]{\eqn{\Gamma(x)}}.
+
+    • If La_library() is empty, sessionInfo() still reports
+      La_version() when available.
+
+    • seq.int(from, to, by, ....) when |by| = 1 now behaves as if by
+      was omitted, and hence returns from:to, possibly integer.
+
+    • seq.Date(from, to, by, ....) and seq.POSIXt(..)  now also work
+      when from is missing and sufficient further arguments are
+      provided, thanks to Michael Chirico's report, patch proposal in
+      PR#17672 and ‘R Dev Day’ contributions.
+
+      The Date method also works for seq(from, to), when by is missing
+      and now defaults to "1 days".
+
+      It is now documented (and tested) that the by string may be
+      _abbreviated_ in both seq methods.
+
+      Both methods return or keep internal type "integer" more
+      consistently now.  Also, as.POSIXct({}) is internally integer.
+
+    • duplicated(), unique(), and anyDuplicated() now also work for
+      class expression vectors.
+
+    • New function use() to use packages in R scripts with full control
+      over what gets added to the search path.  (Actually already
+      available since R 4.4.0.)
+
+    • There is some support for zstd compression of tarballs in tar()
+      and untar().  (This depends on OS support of libzstd or by tar.)
+
+    • print(summary(<numbers>)) gets new optional argument zdigits to
+      allow more flexible and consistent (double) rounding.  The
+      current default zdigits = 4L is somewhat experimental.
+      Specifying both digits = *, zdigits = * allows behaviour
+      independent of the global digits option.
+
+    • The format() method for "difftime" objects gets a new back
+      compatible option with.units.
+
+    • A summary() method for "difftime" objects which prints nicely,
+      similar to those for "Date" and "POSIXct".
+
+    • unique()'s default method now also deals with "difftime" objects.
+
+    • optimize(f, *) when f(x) is not finite says more about the value
+      in its warning message.  It no longer replaces -Inf by the
+      largest _positive_ finite number.
+
+    • The documentation of gamma() and is.numeric() is more specific,
+      thanks to the contributors of PR#18677.
+
+    • New dataset gait thanks to Heather Turner and Ella Kaye, used in
+      examples.
+
+    • New datasets penguins and penguins_raw thanks to Ella Kaye,
+      Heather Turner, and Kristen Gorman.
+
+    • isSymmetric(<matrix>) gains a new option trans = "C"; when set to
+      non-default, it tests for “simple” symmetry of complex matrices.
+
+    • model.frame() produces more informative error messages in some
+      cases when variables in the formula are not found, thanks to Ben
+      Bolker's PR#18860.
+
+    • selectMethod(f, ..) now keeps the function name if the function
+      belongs to a group generic and the method is for the generic.
+
+  BLAS and LAPACK:
+
+    • The bundled BLAS and LAPACK sources have been updated to those
+      shipped as part of January 2025's LAPACK 3.12.1.
+
+    • It is intended that this will be the last update to BLAS and
+      LAPACK in the R sources.  Those building R from source are
+      encouraged to use external BLAS and LAPACK and this will be
+      required in future.
+
+    • This update was mainly bug fixes but contained a barely
+      documented major change.  The set of BLAS routines had been
+      unchanged since 1988, so throughout R's history.  This update
+      introduced new BLAS routines dgemmtr and zgemmtr which are now
+      used by LAPACK routines.  This means that BLAS implementations
+      are no longer interchangeable.
+
+    • To work around this, R can be configured with option
+      --with-2025blas which arranges for the 2025 BLAS additions to be
+      compiled into libRlapack (the internal LAPACK, not built if an
+      external LAPACK is used).
+
+      This option allows the continuation of the practice of swapping
+      the BLAS in use by symlinking lib/libRblas.*.  It has the
+      disadvantage of using the reference BLAS version of the 2025
+      routines whereas an enhanced BLAS might have an optimized version
+      (OpenBLAS does as from version 0.3.29).
+
+    • Windows builds currently use the internal LAPACK and by default
+      the internal BLAS: notes on how to swap the latter _via_
+      Rblas.dll are in file src/extra/blas/Makefile.win.
+
+  INSTALLATION on a UNIX-ALIKE:
+
+    • A C23 compiler (if available) is now selected by default for
+      compilation of R and packages.  R builds can opt out _via_ the
+      configure flag --without-C23, unless the specified or default
+      (usually gcc) compiler defaults to C23: gcc 15 will.
+
+      A C23 compiler is known to be selected with gcc 13-15, LLVM clang
+      18-20 (and 15 should), Apple clang 15-17 and Intel 2024.2-2025.0
+      (and 2022.2 should).
+
+      Current binary distributions on macOS use Apple clang 14 and so
+      do not use C23.
+
+    • The minimum autoconf requirement for a maintainer build has been
+      increased to autoconf 2.72.
+
+    • Building the HTML and Info versions of the R manuals now requires
+      texi2any from Texinfo 6.1 or later.
+
+    • Failures in building the manuals under doc now abort the
+      installation, removing any file which caused the failure.
+
+    • Control of symbol visibility is now supported on macOS (the
+      previous check only worked on ELF platforms).
+
+    • There is now support for installing the debug symbols for
+      recommended packages on macOS: see REC_INSTALL_OPT in file
+      config.site.
+
+    • configure is now able to find an external libintl on macOS (the
+      code from an older GNU gettext distribution failed to try linking
+      with the macOS Core Foundation framework).
+
+  INSTALLATION on WINDOWS:
+
+    • Both building R and installing packages use the C compiler in C23
+      mode.
+
+    • R on Windows by default uses pkg-config for linking against
+      external libraries.  This makes it easier to test R and packages
+      with alternative toolchains (such as from Msys2, e.g., testing
+      with LLVM and possibly with sanitizers). It also allows more
+      significant Rtools updates within a single R minor release.
+
+    • The installer scripts for Windows have been tailored to Rtools45,
+      an update of the Rtools44 toolchain.  It is based on GCC 14.  The
+      experimental support for 64-bit ARM (aarch64) CPUs is based on
+      LLVM 19.  R-devel and R 4.5.x are no longer maintained to be
+      buildable using Rtools44 and it is advised to switch to Rtools45.
+
+  DEPRECATED AND DEFUNCT:
+
+    • is.R() is defunct.  Environment variable _R_DEPRECATED_IS_R_ no
+      longer has any effect.
+
+    • Deprecated (for more than 9 years!) functions linearizeMlist,
+      listFromMlist, and showMlist and the "MethodsList" class for S4
+      method handling were removed from package methods.  Deprecated
+      functions balanceMethodsList, emptyMethodsList,
+      inheritedSubMethodLists, insertMethod, insertMethodInEmptyList,
+      makeMethodsList, mergeMethods, MethodsList, MethodsListSelect,
+      and SignatureMethod were made defunct, as were the "MethodsList"
+      branches of functions assignMethodsMetaData, finalDefaultMethod,
+      and MethodAddCoerce.
+
+    • getMethods(*, table = TRUE) is deprecated.
+
+    • Building with the bundled (and old) version of libintl is
+      deprecated and now gives a configure warning.  This should be
+      selected only if neither the OS's libc (as on GNU Linux) nor an
+      external libintl library provide suitable functions.
+
+      Instead install libintl from a recent version of GNU gettext
+      (available for macOS) or use configure option --disable-nls.
+
+      The ability to use the bundled version may be removed as soon as
+      R 4.5.1.
+
+    • The deprecated xfig() graphics device has been removed.
+
+  PACKAGE INSTALLATION:
+
+    • Packages are now installed using C23 where supported by the OS
+      and R build.
+
+      Packages using R's compiler settings can ask *not* to use C23
+      _via_ including USE_C17 in SystemRequirements or can be installed
+      by R CMD INSTALL --use-C17.  (Some packages ignore these settings
+      in their configure script or when compiling in sub-directories of
+      src, as will those using a src/Makefile.)
+
+    • Source installs now report the package version in the log.
+
+    • There is preliminary support for C++26 with GCC >= 14, Apple
+      clang++ >= 16 and LLVM clang++ >= 17.
+
+  C-LEVEL FACILITIES:
+
+    • The non-API and hidden entry points Rf_setIVector, Rf_setRVector
+      and Rf_setSVector have been removed.
+
+    • The internal code for changing the parent of an environment now
+      signals an error if the new parent is not an environment or if
+      the change would create a cycle in the parent chain.
+
+    • SET_TYPEOF now signals an error unless the old and new types have
+      compatible memory structure and content. Use of SET_TYPE in
+      package C code should be avoided and may be deprecated in the
+      near future. It is better to allocate an object of the desired
+      type in the first place.
+
+    • The set of LAPACK (double and complex) routines declared in the
+      headers R_ext/Lapack.h and R_ext/Applic.h has been extended,
+      mostly to routines actually in use by packages.
+
+    • Memory allocation messages now use the (non-SI notation) "Mb",
+      "Gb" , ..., and "Mbytes" strings as _arguments_ instead of as
+      part of the (translatable format) string.  This is one step for
+      PR#18297; from Henrik Bengtsson.
+
+    • Header R_ext/Constants.h (included by R.h) now always includes
+      header float.h or cfloat for constants such as DBL_MAX.
+
+    • Strict R headers are now the default.  This removes the legacy
+      definitions of PI, Calloc, Realloc and Free: use M_PI, R_Calloc,
+      R_Realloc or R_Free instead.
+
+    • The deprecated and seemingly never-used S-compatibility macros
+      F77_COM and F77_COMDECL have been removed from header R_ext/RS.h.
+
+    • The enum Rboolean defined in header R_ext/Boolean.h now has a
+      fixed underlying type of int on platforms whose C compiler
+      supports this.
+
+      This is a C23 feature (taken from C++11) and also supported in
+      all C standards by some versions of clang (from LLVM and Apple)
+      and (with a warning when using -pedantic) by GCC when in C17
+      mode.
+
+      A fair amount of code has assumed this: it may be changed to a
+      smaller type in future.  In particular, as standard compilers do
+      not check the validity of assignment to an enum, it has been
+      possible to assign NA_INTEGER to an Rboolean variable, coerce it
+      to int and recover the value.
+
+      If there were a platform which used an underlying type of a
+      different size this would be an ABI-breaking change (but we are
+      unaware of any such platform).
+
+    • Header R_ext/Boolean.h now ensures that a bool type is available
+      either as a keyword (C23 and C++) or by including the C99 header
+      stdbool.h.  This is being used internally in R to replace
+      Rboolean by bool.
+
+    • There are new functions asRboolean and asBool, variants of
+      asLogical more suited to converting logical arguments to Rboolean
+      or to bool. They require a length-one input and throw an error if
+      that evaluates to NA.
+
+    • Header R_exts/Error.h now ensures that Rf_error and similar are
+      given a noreturn attribute when used from C++ under all
+      compilers.
+
+    • Header R_exts/Utils.h no longer contains a declaration for
+      F77_SUB(interv).  This is intended to be called from Fortran and
+      was wrongly declared: LOGICAL in Fortran corresponds to int * not
+      Rboolean *.
+
+    • Defining R_INCLUDE_BOOLEAN_H to 0 before including headers R.h or
+      Rinternals.h (or any other header which includes R_ext/Boolean.h)
+      stops the inclusion of header R_ext/Boolean.h which `defines'
+      constants TRUE, FALSE, true, false and the type bool which some
+      package maintainers wish to avoid.
+
+      Note that the last three are keywords in C23 and C++11 so cannot
+      be avoided entirely.  However, with commonly-used compilers they
+      can be masked by a macro of the same name, often with a warning.
+
+  C-LEVEL API:
+
+    • The ‘Writing R Extensions’ Texinfo source now contains very
+      experimental annotations for more clearly identifying the API
+      status of C entry points. These annotations are used to produce
+      indices for API, experimental API, and embedded API entry points
+      in the rendered versions.  This is very preliminary and may be
+      dropped if a better approach emerges.
+
+      Also for Fortran-callable entry points which are part of the API.
+
+    • ‘Writing R Extensions’ has a new section ‘Moving into C API
+      compliance’ to help package authors move away from using non-API
+      endpoints. This section will continue to be updated as work on
+      clarifying and tightening the C API continues.
+
+    • New API function R_mkClosure. This checks that its arguments are
+      valid and should be used instead of allocSExp(CLOSXP followed by
+      SET_FORMALS, SET_BODY, and SET_CLOENV.
+
+    • New API functions R_ClosureFormals, R_ClosureBody, and
+      R_ClosureEnv for extracting closure components.  The existing
+      functions R_ClosureExpr and R_BytecodeExpr have also been added
+      to the API.
+
+    • New API function R_ParentEnv corresponding to R's parent.env().
+
+    • Further non-API entry points have been added to those reported by
+      R CMD check: COMPLEX0, ddfind, DDVAL, ENSURE_NAMEDMAX, ENVFLAGS,
+      FRAME, HASHTAB, INTERNAL, IS_ASCII, IS_UTF8, LEVELS, NAMED,
+      PRSEEN, RDEBUG, REAL0, Rf_findVarInFrame3, SET_BODY, SET_CLOENV,
+      SET_FORMALS, SET_PRSEEN, SET_RDEBUG, STRING_PTR, SYMVALUE, and
+      VECTOR_PTR. Any declarations for these in public header files
+      will be removed in the near future, and they will be hidden where
+      possible.
+
+    • Some R CMD check NOTEs on the use of non-API entry points have
+      been upgraded to WARNINGs in preparation for removing
+      declarations and, where possible, hiding these entry points.
+
+    • Additional non-API entry points have been added to those reported
+      by R CMD check: IS_LONG_VEC, PRCODE, PRENV, PRVALUE, R_nchar,
+      Rf_NonNullStringMatch, R_shallow_duplicate_attr, Rf_StringBlank,
+      SET_TYPEOF, TRUELENGTH, XLENGTH_EX, and XTRUELENGTH.
+
+    • Enable defining R_NO_REMAP_RMATH and calling Rf_*() as has been
+      documented in ‘Writing R Extensions’ for a while, fixing PR#18800
+      thanks to Mikael Jagan and Suharto Anggono.
+
+    • R_GetCurrentSrcref(skip) now skips calls rather than srcrefs,
+      consistent with counting items in the traceback() display.  If
+      skip == NA_INTEGER, it searches for the first srcref, starting at
+      the current evaluation state and proceeding through the call
+      stack; otherwise, it returns the srcref of the requested entry
+      from the call stack.
+
+  UTILITIES:
+
+    • R CMD INSTALL (and hence check) now compile C++ code with
+      -DR_NO_REMAP.
+
+      ‘Writing R Extensions’ has been revised to describe the remapped
+      entry points, for with the Rf_ prefix remains optional when used
+      from C code (but is recommended for new C code).
+
+    • R CMD check --as-cran notes bad parts in the DESCRIPTION file's
+      URL fields.
+
+    • R CMD check now reports more warnings on long-deprecated/obsolete
+      Fortran features reported by gfortran -Wall.  For hints on how to
+      modernize these, see
+      <https://fortranwiki.org/fortran/show/Modernizing+Old+Fortran>.
+
+    • Since almost all supported R versions now use UTF-8, R CMD check
+      no longer by default reports on marked UTF-8 or Latin-1 strings
+      in character data.  Set environment variable
+      _R_CHECK_PACKAGE_DATASETS_SUPPRESS_NOTES_ to a false value for
+      the previous behaviour.
+
+    • tools::checkDocFiles() notes more cases of usage documentation
+      without corresponding \alias.
+
+    • R CMD check with a true value for environment variable
+      _R_CHECK_BASHISMS_ checks more thoroughly, including for bash
+      scripts and bashisms in components of autoconf-generated
+      configure scripts.
+
+    • R CMD check gains option --run-demo to check demo scripts
+      analogously to tests.  This includes a check for undeclared
+      package dependencies: it can also be enabled separately by
+      setting the environment variable _R_CHECK_PACKAGES_USED_IN_DEMO_
+      to a true value (as done by R CMD check --as-cran).
+
+    • R CMD build now supports --compression=zstd on platforms with
+      sufficient support for zstd.
+
+    • tools::texi2pdf(..., texinputs=<paths>) now _pre_pends the
+      specified <paths> to TEXINPUTS.  When building R itself
+      (doc/NEWS.pdf and base vignettes) or package manuals using R CMD
+      Rd2pdf, it is ensured that this R's Rd.sty takes precedence over
+      any other (incompatible) versions in default “texmf trees”.
+
+    • tools::Rd2latex() no longer outputs an \inputencoding{utf8} line
+      by default; such a declaration is obsolete since LaTeX
+      2018-04-01.
+
+  BUG FIXES:
+
+    • update_pkg_po() now copies .mo files to the translation package
+      even if a DESCRIPTION file exists, thanks to Michael Chirico
+      fixing PR#18694.
+
+    • Auto-generated citation() entries no longer include (additional)
+      URLs in the note field (PR#18547).
+
+    • as.data.frame.list() gets a new option new.names and now
+      preserves NA names, thus fixing the format() method for data
+      frames, and also bug PR#18745.  Relatedly, the format() method
+      gets an option cut.names.
+
+    • stem() formats correctly also in cases where rounding up, e.g.,
+      from 9.96 to 10 needs more digits; thanks to Ella Kaye and Kelly
+      Bodwin, fixing PR#8934 during ‘R Dev Day’ at useR!2024.
+
+      Additionally, stem(x) now works normally also when length(x) ==
+      1.
+
+    • tools' toTitleCase() now works better, fixing PR#18674, thanks to
+      Shannon Pileggi, Sarah Zeller, Reiko Okamoto, and Hugo Gruson's
+      ‘R Dev Day’ effort.
+
+    • Printing matrices (typically with many rows and or columns) now
+      also omits columns when desirable according to option max.print,
+      or argument max, respectively.  This is primarily the work of
+      Lorena Abad, Ekaterina Akimova, Hanne Oberman, Abhishek Ulayil,
+      and Lionel Henry at the ‘R Dev Day’, thus fixing PR#15027.
+
+    • Sys.setLanguage() now warns about _some_ failures to change the
+      language.
+
+    • Printing ls.str() now shows "<missing>" even when R's language
+      setting is not English.
+
+    • xyTable() now handles and reports NAs fixing PR#18654.  Thanks to
+      Heather Turner and Zhian Kamvar for report and patch.
+
+    • as(*, "raw") now works as documented, thanks to Mikael Jagan's
+      PR#18795.
+
+    • Informational messages of e.g., print(1:1e4, max=1000), now
+      correctly mention max in addition to getOption("max.print").
+
+    • rowSums(A, dims = dd), colMeans(..), etc, give a more helpful
+      error message when dd is not of length one, thanks to Michael
+      Chirico's PR#18811.
+
+    • seq.Date() no longer explicitly coerces results from integer to
+      double, analogously with seq.default(), seq.int() and
+      seq.POSIXt(), resolving a _modified_ PR#18782.
+
+    • axisTicks(usr, ...) documentation clarification for log = TRUE,
+      fixing bug PR#18821 thanks to Duncan Murdoch.
+
+    • debug() and debugonce(fun) now also accept a string fun when it
+      names an S4 generic, fixing PR#18822 thanks to Mikael Jagan.
+
+    • debugonce(<S4-simple-body>, signature=*) now works correctly when
+      “called twice”, fixing PR#18824 thanks to Mikael Jagan.
+
+    • format(dtime, digits=* / format=*) is more consistent when the
+      POSIXt date-time object dtime has fractional (non integer)
+      seconds.  Fixes PR#17350, thanks to new contributions by LatinR's
+      ‘R Dev Day’ participants, Heather Turner and Dirk Eddelbuettel;
+      also fixes more cases, notably when format contains "
+
+    • options(scipen = NULL) and other invalid values now signal an
+      error instead of invalidating ops relying on a finite integer
+      value.  Values outside the range -9 .. 9999 are now warned about
+      and set to a boundary or to the default 0, e.g., in case of an
+      NA.
+
+    • cbind() could segfault with NULL inputs.  (Seen when R was built
+      with gcc-14, LTO and C99 inlining semantics.)
+
+    • Fix segfault on quartz() from grid.glyph() call with glyphInfo()
+      that describes non-existent font (PR#18784).  Thanks to Tomek
+      Gieorgijewski.
+
+    • format() etc, using decimal.mark = s, by default getting s <-
+      getOption("OutDec"), signals a warning (to become an error in the
+      future) when s is not a string with exactly one character.
+
+    • When s <- getOption("OutDec") is not a string of one character, a
+      warning is signalled now whenever it is used in internal C code,
+      notably when calling the default methods of format().
+
+    • pwilcox() and qwilcox() now check for user interrupt less
+      frequently.
+
+    • summary(<stl>) (which prints directly) finally gets the same
+      digits default as the formatting printing of default summary()
+      method results, and it is documented explicitly.
+
+    • options(show.error.locations = TRUE) once again shows the most
+      recent known location when an error is reported.  Setting its
+      value to "bottom" is no longer supported.  Numerical values are
+      converted to logical.
+
+    • C API function R_GetCurrentSrcref(skip) now returns srcref
+      entries correctly.  (Note that there is also a change to the
+      interpretation of skip; see the C-LEVEL API entry above.)
+
+    • tools::Rd2latex() now removes leading and trailing spaces from
+      \alias entries as documented, fixing indexing and linking hiccups
+      in some PDF manuals.
+
+    • R CMD Rd2pdf can now render the package manual from a --latex
+      installation also when the help contains figures.
+
+    • The argument of as.environment() is now named x, not object, as
+      was always documented and shown when printing it; thanks to Gael
+      Millot's PR#18849.
+
+    • When R CMD check aims at getting the time+date from a world
+      clock, it is more robust against unexpected non-error results,
+      thanks to Michael Chirico's PR#18852.
+
+    • The tools::parseLatex() parser made several parsing errors
+      (PR#18855).
+
+    • Error messages produced by tools::parseLatex() are now more
+      readable (PR#18855).
+
+    • R CMD build <pkg> excludes more file patterns when it tars the
+      <pkg> directory, fixing both PR#18432 and PR#18434, for vim and
+      GNU Global emacs users, thanks to Dirk Eddelbuettel's patch.
+
+    • quantile()'s default method gets an option fuzz to protect
+      against floating point inaccuracy before rounding, thus fixing
+      PR#15811 and, en passant, PR#17683.
+
+    • Printing arrays now also omits columns, rows and slices when
+      desirable according to option max.print, or argument max,
+      respectively, addressing most of the remaining part of PR#15027,
+      thanks to Sherry Zhang's patch.
+
+    • drop.terms(y ~ w, 1) and similar now work, thanks to Benjamin
+      Sommer's report in PR#18861 and collaboration with Heather Turner
+      improving reformulate().
+
+    • Many arguments which should be length-1 logical are checked more
+      thoroughly.  The most commonly seen errors are in unlink(,
+      recursive), tempdir() and the na.rm arguments of max(), min(),
+      sum(), ....
+
+      grep(), strsplit() and similar took non-TRUE/FALSE values of
+      their logical arguments as FALSE, but these were almost always
+      mismatches to unnamed arguments and are now reported as NA.
+
+    • vignette("reshape") is now also available on Windows.
+
+    • trace(coerce, ..) now works correctly, fixing PR#18823 thanks to
+      Mikael Jagan.
+
+    • R CMD check now also reports bad symbols in package shared
+      objects linked in from local static libraries (PR#18789).
+
+    • factanal() now works correctly also, e.g., for GPArotation,
+      oblimin() rotations, fixing PR#18417, thanks to Coen Bernaards
+      and others.
+
+    • Setting attributes on primitive functions is deprecated now and
+      already an error in the development version of R.  Changing the
+      environment of a primitive does no longer happen and signals a
+      warning.
+
+-------------------------------------------------------------------
+Sat Mar  1 21:17:00 UTC 2025 - Detlef Steuer <detlef.steuer@gmx.de>
+
+- CHANGES IN R 4.4.3:
+
+  INSTALLATION:
+
+    * R can be installed using C23 (for example with -std=gnu23 or
+      -std=gnu2x) with recent compilers including gcc 12-14, Apple
+      clang 15-16, LLVM clang 17-20 and Intel icx 2024.2.
+
+      It can be installed with the upcoming (at the time of writing)
+      gcc 15, which defaults to C23.
+
+  C-LEVEL FACILITIES:
+
+    * The functions R_strtod and R_atof now allow hexadecimal constants
+      without an exponent, for compatibility with their C99 versions
+      (PR#18805).
+
+  UTILITIES:
+
+    * R CMD build and R CMD check now allow reference output for demo
+      scripts (demo/<demo>.Rout.save files) to be shipped with the
+      package, as proposed by Torsten Hothorn in PR#18816.
+
+  BUG FIXES:
+
+    * kappa(A, exact=TRUE) for singular A returns Inf more generally,
+      fixing PR#18817 reported by Mikael Jagan.
+
+    * Fixed URLs of the sun spots (sunspot.month etc) data sets and
+      mention future changes due to recalibration.
+
+    * The parser now accepts hexadecimal constants with a decimal point
+      without an exponent (taken as p0) as documented in
+      ?NumericConstants (PR#18819).
+
+    * rbind() now works correctly when inputs include a raw vector and
+      a logical, integer or double vector - previously the inclusion of
+      the latter was garbled.
+
+    * smooth.spline() checks validity of its arguments df.offset and
+      penalty: it could segfault if they were NULL.
+
+    * isGeneric(<primitive>, fdef=*, getName=TRUE) now also returns the
+      name instead of just TRUE, fixing PR#18829 reported by Mikael
+      Jagan.
+
+    * isGeneric(fdef = print) now works, fixing PR#18369 thanks to
+      Mikael Jagan.
+
+    * sort(x, method = "qsort") made illegal accesses when x has length
+      0.
+
+    * dir.create() is protected against being passed an empty string as
+      its path argument.
+
+    * Silent integer overflow could occur in the 'exact' computations
+      for fisher.test() for unrealistic inputs: this is now an error.
+
+    * Some invalid C-level memory accesses are avoided for loglin(,
+      margin = NULL).
+
+      loglin(, param = TRUE) no longer gives an error in corner cases
+      such as a one-dimensional input.
+
+    * dev.capabilities() $ events now reports "Idle" if the device
+      provides it, fixing PR#18836, thanks to Trevor Davis.
+
+    * arima(.., seasonal = <wrong-vector>) correctly errors now, ditto
+      for arima0(), thanks to Norbert Kuder's report on the R-devel
+      list.
+
+    * binomial(<link>)$linkinv(eta) and .. $mu.eta(eta) now also work
+      for "logit" link when is.integer(eta).
+
+    * as.roman(x) now should work platform independently, also for,
+      e.g., x = "IIIII" (= V) and x = "IIIIII" (= VI).
+
+    * R CMD Rd2pdf works again on an installed package directory
+      containing LaTeX help (from option --latex), thanks to a report
+      by Peter Ruckdeschel.
+
+-------------------------------------------------------------------
+Thu Oct 31 11:09:11 UTC 2024 - Detlef Steuer <detlef.steuer@gmx.de>
+
+- CHANGES IN R 4.4.2:
+
+  C-LEVEL FACILITIES:
+
+    * The S-compatibility macros F77_COM and F77_COMDECL defined in
+      header R_ext/RS.h are deprecated and will be removed shortly.  We
+      could find no record of their use.
+
+  BUG FIXES:
+
+    * Mathlib function lgammacor(x) no longer warns about underflow to
+      zero for large x.
+
+    * Text widths and heights were incorrectly reported by the Quartz
+      device if the drawing context didn't exist yet (typically when
+      drawing off-screen to a window that is yet to appear, see
+      PR#18591).
+
+    * The Quartz device could segfault in cases where paths with spaces
+      are used in the new glyph drawing API.  Thanks to Tomek
+      Gieorgijewski (PR#18758).
+
+    * On macOS in R CRAN builds, it is again possible to read
+      little-endian UTF-16 text with a BOM from a connection using
+      encoding="UTF-16".  Users building R from source should avoid
+      using the system libiconv in macOS 14.1 and later.
+
+    * methods' internal .requirePackage() now re-enables primitive
+      method dispatch when needed; thanks to Ivan Krylov for
+      demystifying CRAN package check failures on the R-devel mailing
+      list.
+
 -------------------------------------------------------------------
 Fri Jun 14 08:20:44 UTC 2024 - Detlef Steuer <detlef.steuer@gmx.de>
 

R-base.spec

@@ -1,7 +1,7 @@
 #
 # spec file for package R-base
 #
-# Copyright (c) 2024 SUSE LLC
+# Copyright (c) 2025 SUSE LLC and contributors
 #
 # All modifications and additions to the file contributed by third parties
 # remain the property of their copyright owners, unless otherwise agreed
@@ -23,7 +23,7 @@
 %define release 1
 
 Name:           R-base
-Version:        4.4.1
+Version:        4.5.2
 Release:        %release
 %define Rversion %{version}
 Source0:        R-%{version}.tar.xz
@@ -319,6 +319,8 @@ This package provides the core of R, i.e. all that is in base.
 %lang(es) %{_libdir}/R/library/translations/es/LC_MESSAGES/R-utils.mo
 %lang(es) %{_libdir}/R/library/translations/es/LC_MESSAGES/RGui.mo
 %lang(es) %{_libdir}/R/library/translations/es/LC_MESSAGES/grDevices.mo
+%lang(es) %{_libdir}/R/library/translations/es/LC_MESSAGES/grid.mo
+%lang(es) %{_libdir}/R/library/translations/es/LC_MESSAGES/methods.mo
 %lang(es) %{_libdir}/R/library/translations/es/LC_MESSAGES/parallel.mo
 %lang(es) %{_libdir}/R/library/translations/es/LC_MESSAGES/stats.mo
 %lang(es) %{_libdir}/R/library/translations/es/LC_MESSAGES/tcltk.mo
@@ -359,6 +361,7 @@ This package provides the core of R, i.e. all that is in base.
 %dir %{_libdir}/R/library/translations/hu/LC_MESSAGES
 %lang(hu) %{_libdir}/R/library/translations/hu/LC_MESSAGES/R-base.mo
 %lang(hu) %{_libdir}/R/library/translations/hu/LC_MESSAGES/R-graphics.mo
+%lang(hu) %{_libdir}/R/library/translations/hu/LC_MESSAGES/R-methods.mo
 %lang(hu) %{_libdir}/R/library/translations/hu/LC_MESSAGES/R-parallel.mo
 %lang(hu) %{_libdir}/R/library/translations/hu/LC_MESSAGES/R-splines.mo
 %lang(hu) %{_libdir}/R/library/translations/hu/LC_MESSAGES/R-stats.mo
@@ -409,7 +412,9 @@ This package provides the core of R, i.e. all that is in base.
 %dir %{_libdir}/R/library/translations/ne
 %dir %{_libdir}/R/library/translations/ne/LC_MESSAGES
 %lang(ne) %{_libdir}/R/library/translations/ne/LC_MESSAGES/R.mo
+%lang(ne) %{_libdir}/R/library/translations/ne/LC_MESSAGES/R-base.mo
 %lang(ne) %{_libdir}/R/library/translations/ne/LC_MESSAGES/R-compiler.mo
+%lang(ne) %{_libdir}/R/library/translations/ne/LC_MESSAGES/R-parallel.mo
 %lang(ne) %{_libdir}/R/library/translations/ne/LC_MESSAGES/RGui.mo
 
 %dir %{_libdir}/R/library/translations/nn
@@ -681,7 +686,9 @@ This package provides R-compiler, one of the R-core packages.
 %lang(da) %{_libdir}/R/library/translations/da/LC_MESSAGES/R-compiler.mo
 %lang(de) %{_libdir}/R/library/translations/de/LC_MESSAGES/R-compiler.mo
 %lang(en) %{_libdir}/R/library/translations/en@quot/LC_MESSAGES/R-compiler.mo
+%lang(es) %{_libdir}/R/library/translations/es/LC_MESSAGES/R-compiler.mo
 %lang(fr) %{_libdir}/R/library/translations/fr/LC_MESSAGES/R-compiler.mo
+%lang(hu) %{_libdir}/R/library/translations/hu/LC_MESSAGES/R-compiler.mo
 %lang(it) %{_libdir}/R/library/translations/it/LC_MESSAGES/R-compiler.mo
 %lang(ja) %{_libdir}/R/library/translations/ja/LC_MESSAGES/R-compiler.mo
 %lang(ko) %{_libdir}/R/library/translations/ko/LC_MESSAGES/R-compiler.mo
@@ -1015,8 +1022,11 @@ This package provides R-splines, one of R-core packages.
 %lang(de) %{_libdir}/R/library/translations/de/LC_MESSAGES/splines.mo
 %lang(en) %{_libdir}/R/library/translations/en@quot/LC_MESSAGES/R-splines.mo
 %lang(en) %{_libdir}/R/library/translations/en@quot/LC_MESSAGES/splines.mo
+%lang(es) %{_libdir}/R/library/translations/es/LC_MESSAGES/R-splines.mo
+%lang(es) %{_libdir}/R/library/translations/es/LC_MESSAGES/splines.mo
 %lang(fr) %{_libdir}/R/library/translations/fr/LC_MESSAGES/R-splines.mo
 %lang(fr) %{_libdir}/R/library/translations/fr/LC_MESSAGES/splines.mo
+%lang(hu) %{_libdir}/R/library/translations/hu/LC_MESSAGES/splines.mo
 %lang(it) %{_libdir}/R/library/translations/it/LC_MESSAGES/R-splines.mo
 %lang(it) %{_libdir}/R/library/translations/it/LC_MESSAGES/splines.mo
 %lang(ja) %{_libdir}/R/library/translations/ja/LC_MESSAGES/R-splines.mo
@@ -1114,6 +1124,7 @@ This package provides R-stats4, one of R-core packages.
 %lang(de) %{_libdir}/R/library/translations/de/LC_MESSAGES/R-stats4.mo
 %lang(en) %{_libdir}/R/library/translations/en@quot/LC_MESSAGES/R-stats4.mo
 %lang(fr) %{_libdir}/R/library/translations/fr/LC_MESSAGES/R-stats4.mo
+%lang(hu) %{_libdir}/R/library/translations/hu/LC_MESSAGES/R-stats4.mo
 %lang(it) %{_libdir}/R/library/translations/it/LC_MESSAGES/R-stats4.mo
 %lang(ja) %{_libdir}/R/library/translations/ja/LC_MESSAGES/R-stats4.mo
 %lang(ko) %{_libdir}/R/library/translations/ko/LC_MESSAGES/R-stats4.mo
@@ -1155,6 +1166,7 @@ This package provides R-tcltk, one of R-core packages.
 %lang(de) %{_libdir}/R/library/translations/de/LC_MESSAGES/tcltk.mo
 %lang(en) %{_libdir}/R/library/translations/en@quot/LC_MESSAGES/R-tcltk.mo
 %lang(en) %{_libdir}/R/library/translations/en@quot/LC_MESSAGES/tcltk.mo
+%lang(es) %{_libdir}/R/library/translations/es/LC_MESSAGES/R-tcltk.mo
 %lang(fr) %{_libdir}/R/library/translations/fr/LC_MESSAGES/R-tcltk.mo
 %lang(fr) %{_libdir}/R/library/translations/fr/LC_MESSAGES/tcltk.mo
 %lang(it) %{_libdir}/R/library/translations/it/LC_MESSAGES/R-tcltk.mo
@@ -1165,6 +1177,7 @@ This package provides R-tcltk, one of R-core packages.
 %lang(ko) %{_libdir}/R/library/translations/ko/LC_MESSAGES/tcltk.mo
 %lang(lt) %{_libdir}/R/library/translations/lt/LC_MESSAGES/R-tcltk.mo
 %lang(lt) %{_libdir}/R/library/translations/lt/LC_MESSAGES/tcltk.mo
+%lang(ne) %{_libdir}/R/library/translations/ne/LC_MESSAGES/R-tcltk.mo
 %lang(pl) %{_libdir}/R/library/translations/pl/LC_MESSAGES/R-tcltk.mo
 %lang(pl) %{_libdir}/R/library/translations/pl/LC_MESSAGES/tcltk.mo
 %lang(pt_BR) %{_libdir}/R/library/translations/pt_BR/LC_MESSAGES/R-tcltk.mo
@@ -1189,6 +1202,7 @@ This package provides R-tools, one of R-core packages.
 
 %dir %{_libdir}/R/library/tools/
 %{_libdir}/R/library/tools/DESCRIPTION
+%{_libdir}/R/library/tools/wre.txt
 %{_libdir}/R/library/tools/help/
 %{_libdir}/R/library/tools/html/
 %{_libdir}/R/library/tools/INDEX
@@ -1213,6 +1227,7 @@ This package provides R-tools, one of R-core packages.
 %lang(ko) %{_libdir}/R/library/translations/ko/LC_MESSAGES/tools.mo
 %lang(lt) %{_libdir}/R/library/translations/lt/LC_MESSAGES/R-tools.mo
 %lang(lt) %{_libdir}/R/library/translations/lt/LC_MESSAGES/tools.mo
+%lang(ne) %{_libdir}/R/library/translations/ne/LC_MESSAGES/R-tools.mo
 %lang(pl) %{_libdir}/R/library/translations/pl/LC_MESSAGES/R-tools.mo
 %lang(pl) %{_libdir}/R/library/translations/pl/LC_MESSAGES/tools.mo
 %lang(pt_BR) %{_libdir}/R/library/translations/pt_BR/LC_MESSAGES/R-tools.mo
@@ -1266,6 +1281,7 @@ This package provides R-utils, one of R-core packages.
 %lang(ko) %{_libdir}/R/library/translations/ko/LC_MESSAGES/utils.mo
 %lang(lt) %{_libdir}/R/library/translations/lt/LC_MESSAGES/R-utils.mo
 %lang(lt) %{_libdir}/R/library/translations/lt/LC_MESSAGES/utils.mo
+%lang(ne) %{_libdir}/R/library/translations/ne/LC_MESSAGES/R-utils.mo
 %lang(pl) %{_libdir}/R/library/translations/pl/LC_MESSAGES/R-utils.mo
 %lang(pl) %{_libdir}/R/library/translations/pl/LC_MESSAGES/utils.mo
 %lang(pt_BR) %{_libdir}/R/library/translations/pt_BR/LC_MESSAGES/R-utils.mo
@@ -1306,7 +1322,7 @@ Metapackage, Requires: all recommended Packages
 
 %package -n R-boot
 Summary:        Package provides recommended R-boot
-Version:        1.3.30
+Version:        1.3.32
 Release:        %release
 Requires:       R-base
 
@@ -1338,7 +1354,7 @@ This packages provides R-boot, one of the recommended packages.
 
 %package -n R-class
 Summary:        Package provides recommended R-class
-Version:        7.3.22
+Version:        7.3.23
 Release:        %release
 Requires:       R-base
 
@@ -1370,7 +1386,7 @@ This packages provides R-class, one of the recommended packages.
 
 %package -n R-cluster
 Summary:        Package provides recommended R-cluster
-Version:        2.1.6
+Version:        2.1.8.1
 Release:        %release
 Requires:       R-base
 
@@ -1425,7 +1441,7 @@ This packages provides R-codetools, one of the recommended packages.
 
 %package -n R-foreign
 Summary:        Package provides recommended R-foreign
-Version:        0.8.86
+Version:        0.8.90
 Release:        %release
 Requires:       R-base
 
@@ -1455,7 +1471,7 @@ This packages provides R-foreign, one of the recommended packages.
 
 %package -n R-KernSmooth
 Summary:        Package provides recommended R-KernSmooth
-Version:        2.23.24
+Version:        2.23.26
 Release:        %release
 Requires:       R-base
 
@@ -1484,7 +1500,7 @@ This packages provides R-KernSmooth, one of the recommended packages.
 
 %package -n R-lattice
 Summary:        Package provides recommended R-lattice
-Version:        0.22.6
+Version:        0.22.7
 Release:        %release
 Requires:       R-base
 
@@ -1518,7 +1534,7 @@ This packages provides R-lattice, one of the recommended packages.
 
 %package -n R-MASS
 Summary:        Package provides recommended R-MASS
-Version:        7.3.60.2
+Version:        7.3.65
 Release:        %release
 Requires:       R-base
 
@@ -1551,7 +1567,7 @@ This packages provides R-MASS, one of the recommended packages.
 
 %package -n R-Matrix
 Summary:        Package provides recommended R-Matrix
-Version:        1.7.0
+Version:        1.7.4
 Release:        %release
 Requires:       R-base
 Obsoletes:      R-Matrix-devel <= 1.3.2
@@ -1603,24 +1619,17 @@ This packages provides R-Matrix, one of the recommended packages.
 %{_libdir}/R/library/Matrix/include/Matrix/stubs.c
 %{_libdir}/R/library/Matrix/include/Matrix/version.h
 %dir %{_libdir}/R/library/Matrix/scripts/
-%{_libdir}/R/library/Matrix/scripts/AMD.patch
-%{_libdir}/R/library/Matrix/scripts/CAMD.patch
-%{_libdir}/R/library/Matrix/scripts/CCOLAMD.patch
-%{_libdir}/R/library/Matrix/scripts/CHOLMOD.patch
-%{_libdir}/R/library/Matrix/scripts/COLAMD.patch
-%{_libdir}/R/library/Matrix/scripts/CXSparse.patch
-%{_libdir}/R/library/Matrix/scripts/SuiteSparse_config.patch
-%{_libdir}/R/library/Matrix/scripts/api.patch
+%{_libdir}/R/library/Matrix/scripts/cholmod.h.patch
+%{_libdir}/R/library/Matrix/scripts/SuiteSparse.patch
 %{_libdir}/R/library/Matrix/scripts/disclaimer.txt
 %{_libdir}/R/library/Matrix/scripts/rules.mk
 %{_libdir}/R/library/Matrix/scripts/rules.sh
 %{_libdir}/R/library/Matrix/scripts/sources.mk
 %{_libdir}/R/library/Matrix/scripts/ssget.sh
-%{_libdir}/R/library/Matrix/scripts/wall.patch
 
 %package -n R-mgcv
 Summary:        Package provides recommended R-mgcv
-Version:        1.9.1
+Version:        1.9.3
 Release:        %release
 Requires:       R-base
 
@@ -1650,7 +1659,7 @@ This packages provides R-mgcv, one of the recommended packages.
 
 %package -n R-nlme
 Summary:        Package provides recommended R-nlme
-Version:        3.1.164
+Version:        3.1.168
 Release:        %release
 Requires:       R-base
 
@@ -1682,7 +1691,7 @@ This packages provides R-nlme, one of the recommended packages.
 
 %package -n R-nnet
 Summary:        Package provides recommended R-nnet
-Version:        7.3.19
+Version:        7.3.20
 Release:        %release
 Requires:       R-base
 
@@ -1713,7 +1722,7 @@ This packages provides R-nnet, one of the recommended packages.
 
 %package -n R-rpart
 Summary:        Package provides recommended R-rpart
-Version:        4.1.23
+Version:        4.1.24
 Release:        %release
 Requires:       R-base
 
@@ -1745,7 +1754,7 @@ This packages provides R-rpart, one of the recommended packages.
 
 %package -n R-spatial
 Summary:        Package provides recommended R-spatial
-Version:        7.3.17
+Version:        7.3.18
 Release:        %release
 Requires:       R-base
 
@@ -1778,7 +1787,7 @@ This packages provides R-spatial, one of the recommended packages.
 
 %package -n R-survival
 Summary:        Package provides recommended R-survival
-Version:        3.6.4
+Version:        3.8.3
 Release:        %release
 Requires:       R-base