eigen3/eigen3.spec

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#
# spec file for package eigen3
#
# Copyright (c) 2020 SUSE LLC
#
# All modifications and additions to the file contributed by third parties
# remain the property of their copyright owners, unless otherwise agreed
# upon. The license for this file, and modifications and additions to the
# file, is the same license as for the pristine package itself (unless the
# license for the pristine package is not an Open Source License, in which
# case the license is the MIT License). An "Open Source License" is a
# license that conforms to the Open Source Definition (Version 1.9)
# published by the Open Source Initiative.
# Please submit bugfixes or comments via https://bugs.opensuse.org/
#
%global flavor @BUILD_FLAVOR@%{nil}
%global pkgname eigen3
Accepting request 842001 from home:badshah400:branches:science - Update to version 3.3.8: * General bug fixes: - Issue #1995: Fix a failure in the GEBP kernel when using small L1 cache sizes, OpenMP and FMA. - Issue #1990: Make CMake accept installation paths relative to CMAKE_INSTALL_PREFIX. - Issue #1974: Fix issue when reserving an empty sparse matrix - Issue #1823: Fix incorrect use of std::abs - Issue #1788: Fix rule-of-three violations inside the stable modules. This fixes deprecated-copy warnings when compiling with GCC>=9. Also protect some additional Base-constructors from getting called by user code code (Issue #1587) - Issue #1796: Make matrix squareroot usable for Map and Ref types. - Issue #1281: Fix AutoDiffScalar's make_coherent for nested expression of constant ADs. - Issue #1761: Fall back is_integral to std::is_integral in c++11 and fix internal::is_integral<size_t/ptrdiff_t> with MSVC 2013 and older. - Issue #1741: Fix self-adjoint*matrix, triangular*matrix, and triangular^1*matrix with a destination having a non-trivial inner-stride. - Issue #1741: Fix SelfAdjointView::rankUpdate and product to triangular part for destination with non-trivial inner stride. - Issue #1741: Fix C.noalias() = A*C; with C.innerStride()!=1. - Issue #1695: Fix a numerical robustness issue in BDCSVD. - Issue #1692: Enable enum as sizes of Matrix and Array. - Issue #1689: Fix used-but-marked-unused warning. - Issue #1679: Avoid possible division by 0 in complex-schur. - Issue #1676: Fix C++17 template deduction in DenseBase. - Issue #1669: Fix PartialPivLU/inverse with zero-sized matrices. - Issue #1557: Fix RealSchur and EigenSolver for matrices with only zeros on the diagonal. * Performance related fixes: - Issue #1562: Optimize evaluation of small products of the form s*A*B by rewriting them as: s*(A.lazyProduct(B)) to save a costly temporary. Measured speedup from 2x to 5x... - Fix performance issue with SimplicialLDLT for complexes coefficients. * Misc fixes: - Fix QuaternionBase::cast for quaternion map and wrapper. - Fix case issue with Lapack unit tests. - Fix possible conflict with an externally defined "real" type when using gcc-5. - Provide numext::[u]int{32,64}_t. - Initialize isometric transforms like affine transforms. - Change typedefs from private to protected to fix MSVC compilation. - Fix compilation of FFTW unit test. - Fix compilation of BLAS backend and frontend. - Fix real/imag namespace conflict. - Avoid throwing in destructors. - Fix precision issue in SelfAdjointEigenSolver.h - Make digits10() return an integer. - Use pade for matrix exponential also for complex values. - Cast Index to RealScalar in SVDBase to fix an issue when RealScalar is not implicitly convertible to Index. - Provide EIGEN_HAS_C99_MATH when using MSVC. - Various fixes in polynomial solver and its unit tests. - nd 4415d4e2d: Extend polynomial solver unit tests to complexes. - Automatically switch between EigenSolver and ComplexEigenSolver, and fix a few Real versus Scalar issues. - Enable construction of Ref<VectorType> from a runtime vector. - Fix a problem of old gcc versions having problems with recursive #pragma GCC diagnostic push/pop. - Fix compilation with expression template scalar type. - Backport AVX512 implementation to 3.3. - Fix StlDeque compilation issue with GCC 10. - Avoid false-positive test results in non-linear optimization tests. - Fix undefined behaviour caused by uncaught exceptions in OMP section of parallel GEBP kernel. - Fix a bug with half-precision floats on GPUs. * Fixed warnings: - Fix some maybe-uninitialized warnings in AmbiVector.h and test bdcsvd. - Silent cmake warnings in Lapack CMakeLists.txt. - Rename variable which shadows class name in Polynomials module. - Workaround gcc's alloc-size-larger-than= warning in DenseStorage.h. - Hide some unused variable warnings in g++8.1 in Tensor contraction mapper. - Fix gcc 8.1 warning: "maybe use uninitialized" in std tests. - Fix always true warning with gcc 4.7in test numext. - Fix nonnull-compare warning in test geo_alignedbox. - Disable ignoring attributes warning in vectorization logic test. - Fix a gcc7 warning about bool * bool in abs2 default implementation. - Fix a warning in SparseSelfAdjointView about a branch statement always evaluation to false. - Minor rebase of patches to fix offsets. - Specify relative path to includedir as option to cmake as it only accepts paths relative to CMAKE_INSTALL_PREFIX now. - Drop Group tags. OBS-URL: https://build.opensuse.org/request/show/842001 OBS-URL: https://build.opensuse.org/package/show/science/eigen3?expand=0&rev=31
2020-10-19 16:36:21 +02:00
%global srcname eigen
# The OpenGL support test fails
%bcond_with opengl_test
# Tests fail for different reasons within the test-suite itself; disable for now
# See e.g. https://gitlab.com/libeigen/eigen/-/issues/2088, https://gitlab.com/libeigen/eigen/-/issues/2092
# Also balloons the resources required: > 32 GiB disk space + >= 12 GiB memory
%bcond_with tests
%if "%{flavor}" == "docs"
%define pkgsuffix -doc
%endif
Name: eigen3%{?pkgsuffix}
Version: 3.3.9
Release: 0
Summary: C++ Template Library for Linear Algebra
License: MPL-2.0 AND LGPL-2.1-only AND LGPL-2.1-or-later AND BSD-3-Clause
URL: http://eigen.tuxfamily.org/
Accepting request 842001 from home:badshah400:branches:science - Update to version 3.3.8: * General bug fixes: - Issue #1995: Fix a failure in the GEBP kernel when using small L1 cache sizes, OpenMP and FMA. - Issue #1990: Make CMake accept installation paths relative to CMAKE_INSTALL_PREFIX. - Issue #1974: Fix issue when reserving an empty sparse matrix - Issue #1823: Fix incorrect use of std::abs - Issue #1788: Fix rule-of-three violations inside the stable modules. This fixes deprecated-copy warnings when compiling with GCC>=9. Also protect some additional Base-constructors from getting called by user code code (Issue #1587) - Issue #1796: Make matrix squareroot usable for Map and Ref types. - Issue #1281: Fix AutoDiffScalar's make_coherent for nested expression of constant ADs. - Issue #1761: Fall back is_integral to std::is_integral in c++11 and fix internal::is_integral<size_t/ptrdiff_t> with MSVC 2013 and older. - Issue #1741: Fix self-adjoint*matrix, triangular*matrix, and triangular^1*matrix with a destination having a non-trivial inner-stride. - Issue #1741: Fix SelfAdjointView::rankUpdate and product to triangular part for destination with non-trivial inner stride. - Issue #1741: Fix C.noalias() = A*C; with C.innerStride()!=1. - Issue #1695: Fix a numerical robustness issue in BDCSVD. - Issue #1692: Enable enum as sizes of Matrix and Array. - Issue #1689: Fix used-but-marked-unused warning. - Issue #1679: Avoid possible division by 0 in complex-schur. - Issue #1676: Fix C++17 template deduction in DenseBase. - Issue #1669: Fix PartialPivLU/inverse with zero-sized matrices. - Issue #1557: Fix RealSchur and EigenSolver for matrices with only zeros on the diagonal. * Performance related fixes: - Issue #1562: Optimize evaluation of small products of the form s*A*B by rewriting them as: s*(A.lazyProduct(B)) to save a costly temporary. Measured speedup from 2x to 5x... - Fix performance issue with SimplicialLDLT for complexes coefficients. * Misc fixes: - Fix QuaternionBase::cast for quaternion map and wrapper. - Fix case issue with Lapack unit tests. - Fix possible conflict with an externally defined "real" type when using gcc-5. - Provide numext::[u]int{32,64}_t. - Initialize isometric transforms like affine transforms. - Change typedefs from private to protected to fix MSVC compilation. - Fix compilation of FFTW unit test. - Fix compilation of BLAS backend and frontend. - Fix real/imag namespace conflict. - Avoid throwing in destructors. - Fix precision issue in SelfAdjointEigenSolver.h - Make digits10() return an integer. - Use pade for matrix exponential also for complex values. - Cast Index to RealScalar in SVDBase to fix an issue when RealScalar is not implicitly convertible to Index. - Provide EIGEN_HAS_C99_MATH when using MSVC. - Various fixes in polynomial solver and its unit tests. - nd 4415d4e2d: Extend polynomial solver unit tests to complexes. - Automatically switch between EigenSolver and ComplexEigenSolver, and fix a few Real versus Scalar issues. - Enable construction of Ref<VectorType> from a runtime vector. - Fix a problem of old gcc versions having problems with recursive #pragma GCC diagnostic push/pop. - Fix compilation with expression template scalar type. - Backport AVX512 implementation to 3.3. - Fix StlDeque compilation issue with GCC 10. - Avoid false-positive test results in non-linear optimization tests. - Fix undefined behaviour caused by uncaught exceptions in OMP section of parallel GEBP kernel. - Fix a bug with half-precision floats on GPUs. * Fixed warnings: - Fix some maybe-uninitialized warnings in AmbiVector.h and test bdcsvd. - Silent cmake warnings in Lapack CMakeLists.txt. - Rename variable which shadows class name in Polynomials module. - Workaround gcc's alloc-size-larger-than= warning in DenseStorage.h. - Hide some unused variable warnings in g++8.1 in Tensor contraction mapper. - Fix gcc 8.1 warning: "maybe use uninitialized" in std tests. - Fix always true warning with gcc 4.7in test numext. - Fix nonnull-compare warning in test geo_alignedbox. - Disable ignoring attributes warning in vectorization logic test. - Fix a gcc7 warning about bool * bool in abs2 default implementation. - Fix a warning in SparseSelfAdjointView about a branch statement always evaluation to false. - Minor rebase of patches to fix offsets. - Specify relative path to includedir as option to cmake as it only accepts paths relative to CMAKE_INSTALL_PREFIX now. - Drop Group tags. OBS-URL: https://build.opensuse.org/request/show/842001 OBS-URL: https://build.opensuse.org/package/show/science/eigen3?expand=0&rev=31
2020-10-19 16:36:21 +02:00
Source0: https://gitlab.com/libeigen/eigen/-/archive/%{version}/%{srcname}-%{version}.tar.bz2
Patch0: 0001-Disable-Altivec-for-ppc64le.patch
Patch1: 0001-Do-stack-allignment-on-ppc.patch
# PATCH-FIX-OPENSUSE 01_install_FindEigen3.patch asterios.dramis@gmail.com -- Install FindEigen3.cmake
Patch3: 01_install_FindEigen3.patch
# PATCH-FIX-OPENSUSE eigen3-3.3.1-fixcmake.patch -- Fix double {prefix} as we use INCLUDE_INSTALL_DIR with {_includedir}
Patch4: eigen3-3.3.1-fixcmake.patch
# PATCH-FIX-UPSTREAM eigen3-CastXML-support-for-aarch64.patch badshah400@gmail.com -- Add CastXML support for ARM aarch64 [https://gitlab.com/libeigen/eigen/-/issues/1979]
Patch5: eigen3-CastXML-support-for-aarch64.patch
%if %{with tests}
# SECTION Patches to fix tests
# PATCH-FIX-UPSTREAM https://gitlab.com/libeigen/eigen/-/commit/72c0bbe2bd1c49c75b6efdb81d0558f8b62578d1
Patch7: eigen3-failtests-handling.patch
# PATCH-FIX-UPSTREAM eigen3-make-sparseqr-unit-test-stable.patch https://gitlab.com/libeigen/eigen/-/issues/899 badshah400@gmail.com -- Make sparseqr test more stable to prevent random failures; patch taken from upstream commit
Patch8: eigen3-make-sparseqr-unit-test-stable.patch
# PATCH-FIX-UPSTREAM eigen3-googlehash-detection.patch badshah400@gmail.com -- GoogleHash needs C++11 std to compile test code and be succesfully detected
Patch9: eigen3-googlehash-detection.patch
# PATCH-FIX-UPSTREAM eigen3-fix-forward_adolc-unit-test.patch badshah400@gmail -- Prevent conflict of std::min/max with eigen's macros by importing eigen test-suite's main.h header only after all system headers have been included
Patch10: eigen3-fix-forward_adolc-unit-test.patch
# /SECTION
%endif
BuildRequires: adolc-devel
BuildRequires: cmake
BuildRequires: fftw3-devel
BuildRequires: gcc-c++
BuildRequires: gcc-fortran
BuildRequires: gmp-devel
BuildRequires: gsl-devel
BuildRequires: libboost_headers-devel
BuildRequires: metis-devel
BuildRequires: mpfr-devel
BuildRequires: pkg-config
BuildRequires: sparsehash-devel
BuildRequires: suitesparse-devel
BuildRequires: superlu-devel
%if "%{flavor}" == "docs"
BuildRequires: doxygen
BuildRequires: fdupes
BuildRequires: graphviz
BuildRequires: graphviz-gd
BuildRequires: texlive-dvips
BuildRequires: texlive-latex
BuildRequires: tex(newunicodechar.sty)
%endif
%if %{with opengl_test}
BuildRequires: freeglut-devel
BuildRequires: glew-devel
BuildRequires: pkgconfig(gl)
%endif
BuildArch: noarch
%description
Eigen is a C++ template library for linear algebra: matrices, vectors,
numerical solvers, and related algorithms.
%package devel
Summary: C++ Template Library for Linear Algebra
# libeigen3-devel was last used at openSUSE 13.1 (version 3.2.0)
Provides: libeigen3-devel = %{version}
Obsoletes: libeigen3-devel < %{version}
%description devel
Eigen is a C++ template library for linear algebra: matrices, vectors,
numerical solvers, and related algorithms.
%if "%{flavor}" == "docs"
Summary: Documentation for the Eigen3 C++ Template Library for Linear Algebra
%description
Documentation in HTML format for the Eigen3 C++ Template Library
for Linear Algebra
%endif
%prep
%autosetup -p1 -n %{srcname}-%{version}
# Fix rpmlint warning "wrong-file-end-of-line-encoding"
sed -i 's/\r$//' COPYING.MINPACK
# Remove build time references so build-compare can do its work
echo "HTML_TIMESTAMP = NO" >> doc/Doxyfile.in
%build
%cmake \
Accepting request 842001 from home:badshah400:branches:science - Update to version 3.3.8: * General bug fixes: - Issue #1995: Fix a failure in the GEBP kernel when using small L1 cache sizes, OpenMP and FMA. - Issue #1990: Make CMake accept installation paths relative to CMAKE_INSTALL_PREFIX. - Issue #1974: Fix issue when reserving an empty sparse matrix - Issue #1823: Fix incorrect use of std::abs - Issue #1788: Fix rule-of-three violations inside the stable modules. This fixes deprecated-copy warnings when compiling with GCC>=9. Also protect some additional Base-constructors from getting called by user code code (Issue #1587) - Issue #1796: Make matrix squareroot usable for Map and Ref types. - Issue #1281: Fix AutoDiffScalar's make_coherent for nested expression of constant ADs. - Issue #1761: Fall back is_integral to std::is_integral in c++11 and fix internal::is_integral<size_t/ptrdiff_t> with MSVC 2013 and older. - Issue #1741: Fix self-adjoint*matrix, triangular*matrix, and triangular^1*matrix with a destination having a non-trivial inner-stride. - Issue #1741: Fix SelfAdjointView::rankUpdate and product to triangular part for destination with non-trivial inner stride. - Issue #1741: Fix C.noalias() = A*C; with C.innerStride()!=1. - Issue #1695: Fix a numerical robustness issue in BDCSVD. - Issue #1692: Enable enum as sizes of Matrix and Array. - Issue #1689: Fix used-but-marked-unused warning. - Issue #1679: Avoid possible division by 0 in complex-schur. - Issue #1676: Fix C++17 template deduction in DenseBase. - Issue #1669: Fix PartialPivLU/inverse with zero-sized matrices. - Issue #1557: Fix RealSchur and EigenSolver for matrices with only zeros on the diagonal. * Performance related fixes: - Issue #1562: Optimize evaluation of small products of the form s*A*B by rewriting them as: s*(A.lazyProduct(B)) to save a costly temporary. Measured speedup from 2x to 5x... - Fix performance issue with SimplicialLDLT for complexes coefficients. * Misc fixes: - Fix QuaternionBase::cast for quaternion map and wrapper. - Fix case issue with Lapack unit tests. - Fix possible conflict with an externally defined "real" type when using gcc-5. - Provide numext::[u]int{32,64}_t. - Initialize isometric transforms like affine transforms. - Change typedefs from private to protected to fix MSVC compilation. - Fix compilation of FFTW unit test. - Fix compilation of BLAS backend and frontend. - Fix real/imag namespace conflict. - Avoid throwing in destructors. - Fix precision issue in SelfAdjointEigenSolver.h - Make digits10() return an integer. - Use pade for matrix exponential also for complex values. - Cast Index to RealScalar in SVDBase to fix an issue when RealScalar is not implicitly convertible to Index. - Provide EIGEN_HAS_C99_MATH when using MSVC. - Various fixes in polynomial solver and its unit tests. - nd 4415d4e2d: Extend polynomial solver unit tests to complexes. - Automatically switch between EigenSolver and ComplexEigenSolver, and fix a few Real versus Scalar issues. - Enable construction of Ref<VectorType> from a runtime vector. - Fix a problem of old gcc versions having problems with recursive #pragma GCC diagnostic push/pop. - Fix compilation with expression template scalar type. - Backport AVX512 implementation to 3.3. - Fix StlDeque compilation issue with GCC 10. - Avoid false-positive test results in non-linear optimization tests. - Fix undefined behaviour caused by uncaught exceptions in OMP section of parallel GEBP kernel. - Fix a bug with half-precision floats on GPUs. * Fixed warnings: - Fix some maybe-uninitialized warnings in AmbiVector.h and test bdcsvd. - Silent cmake warnings in Lapack CMakeLists.txt. - Rename variable which shadows class name in Polynomials module. - Workaround gcc's alloc-size-larger-than= warning in DenseStorage.h. - Hide some unused variable warnings in g++8.1 in Tensor contraction mapper. - Fix gcc 8.1 warning: "maybe use uninitialized" in std tests. - Fix always true warning with gcc 4.7in test numext. - Fix nonnull-compare warning in test geo_alignedbox. - Disable ignoring attributes warning in vectorization logic test. - Fix a gcc7 warning about bool * bool in abs2 default implementation. - Fix a warning in SparseSelfAdjointView about a branch statement always evaluation to false. - Minor rebase of patches to fix offsets. - Specify relative path to includedir as option to cmake as it only accepts paths relative to CMAKE_INSTALL_PREFIX now. - Drop Group tags. OBS-URL: https://build.opensuse.org/request/show/842001 OBS-URL: https://build.opensuse.org/package/show/science/eigen3?expand=0&rev=31
2020-10-19 16:36:21 +02:00
-DINCLUDE_INSTALL_DIR=include/eigen3 \
-DCMAKE_SKIP_RPATH:BOOL=OFF \
-DCMAKE_SKIP_INSTALL_RPATH:BOOL=ON \
-DEIGEN_TEST_CXX11:Bool=%{?with_tests:ON}%{!?with_tests:OFF} \
-DEIGEN_TEST_OPENMP:Bool=%{?with_tests:ON}%{!?with_tests:OFF}
%if "%{flavor}" == ""
make %{?_smp_mflags} all %{?with_tests:buildtests}
%else
make %{?_smp_mflags} doc
%endif
rm -f doc/html/*.tgz
find doc -name _formulas.log -print -delete
%install
%if "%{flavor}" == ""
%cmake_install
%else
%fdupes -s build/doc/html/
%endif
%if "%{flavor}" == ""
%if %{with tests}
%check
# Run with a fixed seed to prevent random failures: https://gitlab.com/libeigen/eigen/-/issues/2088
export EIGEN_SEED=100
# Repeat each test once to reduce time spent, since we use a fixed seed anyway
export EIGEN_REPEAT=1
%ctest
%endif
%endif
%if "%{flavor}" == "docs"
%files
%doc build/doc/html/
%else
%files devel
%license COPYING.*
%{_includedir}/eigen3/
%{_datadir}/eigen3/
%{_datadir}/pkgconfig/eigen3.pc
%{_datadir}/cmake/Modules/FindEigen3.cmake
%endif
%changelog