Update lalapps to 10.0.0.
OBS-URL: https://build.opensuse.org/package/show/science/lalapps?expand=0&rev=21
This commit is contained in:
Git OBS Bridge
commit
ddc335e8d2
23
.gitattributes
vendored
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23
.gitattributes
vendored
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@ -0,0 +1,23 @@
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## Default LFS
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*.7z filter=lfs diff=lfs merge=lfs -text
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*.bsp filter=lfs diff=lfs merge=lfs -text
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*.bz2 filter=lfs diff=lfs merge=lfs -text
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*.gem filter=lfs diff=lfs merge=lfs -text
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||||
*.gz filter=lfs diff=lfs merge=lfs -text
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||||
*.jar filter=lfs diff=lfs merge=lfs -text
|
||||
*.lz filter=lfs diff=lfs merge=lfs -text
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||||
*.lzma filter=lfs diff=lfs merge=lfs -text
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||||
*.obscpio filter=lfs diff=lfs merge=lfs -text
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||||
*.oxt filter=lfs diff=lfs merge=lfs -text
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||||
*.pdf filter=lfs diff=lfs merge=lfs -text
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||||
*.png filter=lfs diff=lfs merge=lfs -text
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||||
*.rpm filter=lfs diff=lfs merge=lfs -text
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||||
*.tbz filter=lfs diff=lfs merge=lfs -text
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*.tbz2 filter=lfs diff=lfs merge=lfs -text
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||||
*.tgz filter=lfs diff=lfs merge=lfs -text
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||||
*.ttf filter=lfs diff=lfs merge=lfs -text
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||||
*.txz filter=lfs diff=lfs merge=lfs -text
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*.whl filter=lfs diff=lfs merge=lfs -text
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||||
*.xz filter=lfs diff=lfs merge=lfs -text
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||||
*.zip filter=lfs diff=lfs merge=lfs -text
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*.zst filter=lfs diff=lfs merge=lfs -text
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1
.gitignore
vendored
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1
.gitignore
vendored
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@ -0,0 +1 @@
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.osc
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3
lalapps-10.0.0.tar.xz
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3
lalapps-10.0.0.tar.xz
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@ -0,0 +1,3 @@
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version https://git-lfs.github.com/spec/v1
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||||
oid sha256:1d677956daafc00def55f88cefd8c99a3ce2514af98f8af28b3e36d86bab714e
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size 2269020
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||||
3
lalapps-9.2.2.tar.xz
Normal file
3
lalapps-9.2.2.tar.xz
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@ -0,0 +1,3 @@
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||||
version https://git-lfs.github.com/spec/v1
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||||
oid sha256:f64ced5a18756178afbf6e3c271b1501915683b428f08f9ff8714cb0e5c051a5
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size 2281872
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||||
18
lalapps-disable-testWeave-for-non-x86_64.patch
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18
lalapps-disable-testWeave-for-non-x86_64.patch
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@ -0,0 +1,18 @@
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Index: lalapps-9.2.1/configure.ac
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===================================================================
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--- lalapps-9.2.1.orig/configure.ac
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+++ lalapps-9.2.1/configure.ac
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@@ -268,6 +268,13 @@ AM_CPPFLAGS="-I\$(top_srcdir)/src ${AM_C
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# RedHat-derived systems.
|
||||
AC_SUBST([pkgpythondir], ["\${pkgpyexecdir}"])
|
||||
|
||||
+# testWeave_* results have tolerance issues that show up in some archs, use only for x86_64
|
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+# See https://git.ligo.org/lscsoft/lalsuite/-/issues/105
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+AC_MSG_CHECKING([if arch is non-x86_64 so weave tests should be disabled])
|
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+AC_DEFINE([SKIP_WEAVE_TESTS], [0], [Set to 1 for non-x86_64 architectures])
|
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+AS_IF([test x"$(arch)" != "xx86_64"], AC_MSG_RESULT([yes]), AC_MSG_RESULT([no]))
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+AM_CONDITIONAL([SKIP_WEAVE_TESTS], [test x"$(arch)" != "xx86_64"])
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+
|
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# output
|
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AC_OUTPUT
|
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AC_MSG_NOTICE([
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13
lalapps-fix-uninitialised-var.patch
Normal file
13
lalapps-fix-uninitialised-var.patch
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@ -0,0 +1,13 @@
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Index: lalapps-9.2.1/src/string/StringSearch.c
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===================================================================
|
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--- lalapps-9.2.1.orig/src/string/StringSearch.c
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+++ lalapps-9.2.1/src/string/StringSearch.c
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@@ -200,7 +200,7 @@ int main(int argc,char *argv[])
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unsigned seg_length;
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StringTemplate strtemplate[MAXTEMPLATES];
|
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int NTemplates;
|
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- int NTemplates_fix; /* number of template given by the template bank file */
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+ int NTemplates_fix = 0; /* number of template given by the template bank file */
|
||||
REAL8 fcutoff_fix[MAXTEMPLATES]; /* high frequency cutoffs given by the template bank file */
|
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SnglBurst *events=NULL;
|
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ProcessTable *process;
|
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170
lalapps.changes
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170
lalapps.changes
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@ -0,0 +1,170 @@
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-------------------------------------------------------------------
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Sat Jul 20 03:50:36 UTC 2024 - Atri Bhattacharya <badshah400@gmail.com>
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||||
|
||||
- Update to version 10.0.0:
|
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* No release notes.
|
||||
|
||||
-------------------------------------------------------------------
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Mon Jan 22 08:20:01 UTC 2024 - Atri Bhattacharya <badshah400@gmail.com>
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|
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- Update to version 9.2.2:
|
||||
* No release notes.
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||||
|
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-------------------------------------------------------------------
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Tue May 23 12:06:57 UTC 2023 - Atri Bhattacharya <badshah400@gmail.com>
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||||
|
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- Update to version 9.2.1:
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* No release notes.
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- Update versions of lal related packages in (Build)Requires.
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|
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-------------------------------------------------------------------
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Sat Aug 20 02:48:16 UTC 2022 - Atri Bhattacharya <badshah400@gmail.com>
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- Update to version 9.0.0:
|
||||
* No release notes.
|
||||
- Update source URL.
|
||||
|
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-------------------------------------------------------------------
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Mon Jan 3 00:52:11 UTC 2022 - Atri Bhattacharya <badshah400@gmail.com>
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||||
|
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- Update to version 7.4.0:
|
||||
* No release notes.
|
||||
- Drop lalapps-gcc11-array-bounds-decl.patch: upstreamed.
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||||
|
||||
-------------------------------------------------------------------
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Wed Sep 15 09:20:02 UTC 2021 - Atri Bhattacharya <badshah400@gmail.com>
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|
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- Do not pass "-Wno-enum-conversion" to CFLAGS as XLALERROR
|
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issues have been fixed (probably with version 7.1.0).
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|
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-------------------------------------------------------------------
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Mon Sep 13 13:58:08 UTC 2021 - Atri Bhattacharya <badshah400@gmail.com>
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- Add lalapps-disable-testWeave-for-non-x86_64.patch: Disable
|
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Weave related tests on all but x86_64 where tolerance errors
|
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show up, see https://git.ligo.org/lscsoft/lalsuite/-/issues/105,
|
||||
boo#1189928; introduces BuildRequires: libtool and requires
|
||||
running autoreconf before configure.
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|
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-------------------------------------------------------------------
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Tue Jun 8 20:51:27 UTC 2021 - Atri Bhattacharya <badshah400@gmail.com>
|
||||
|
||||
- Add lalapps-gcc11-array-bounds-decl.patch: Fix building with gcc
|
||||
11 by correcting array bounds declaration; patch part of
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upstream merge request
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[https://git.ligo.org/lscsoft/lalsuite/-/merge_requests/1605].
|
||||
|
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-------------------------------------------------------------------
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Tue Apr 20 13:53:56 UTC 2021 - Ben Greiner <code@bnavigator.de>
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- Fix runtime requirement for python-lal 7.1.0
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-------------------------------------------------------------------
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||||
Sat Feb 27 00:02:59 UTC 2021 - Atri Bhattacharya <badshah400@gmail.com>
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- Update to version 7.2.0 (no release notes).
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||||
|
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-------------------------------------------------------------------
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Fri Feb 12 21:51:42 UTC 2021 - Ben Greiner <code@bnavigator.de>
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- Update to version 7.1.0
|
||||
* no public changelog
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||||
- Skip python36 build. Due to NEP 29, astropy, numpy, scipy and co.
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||||
do not have a python36 flavored package in TW
|
||||
- Refresh lalapps-fix-uninitialised-var.patch
|
||||
- Enable test suite
|
||||
- Fix the python subpackage setup
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-------------------------------------------------------------------
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Mon Nov 2 10:49:34 UTC 2020 - Atri Bhattacharya <badshah400@gmail.com>
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|
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- Replace BuildRequires: libframe-devel by framel-devel: the
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former is superseded by the latter.
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||||
- Specfile cleanups using spec-cleaner.
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||||
|
||||
-------------------------------------------------------------------
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||||
Mon Aug 31 06:10:58 UTC 2020 - Atri Bhattacharya <badshah400@gmail.com>
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||||
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||||
- Update to version 6.26.1:
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||||
* No release notes.
|
||||
|
||||
-------------------------------------------------------------------
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||||
Tue Jul 7 02:34:22 UTC 2020 - Atri Bhattacharya <badshah400@gmail.com>
|
||||
|
||||
- Update to version 6.26.0:
|
||||
* No release notes.
|
||||
- Minor refresh of lalapps-fix-uninitialised-var.patch with
|
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upstream file naming and other changes.
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||||
- Disable 32-bit builds: no longer supported upstream.
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||||
- Fix an env based hashbang.
|
||||
|
||||
-------------------------------------------------------------------
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||||
Wed Jul 1 01:21:52 UTC 2020 - Atri Bhattacharya <badshah400@gmail.com>
|
||||
|
||||
- Pass "-Wno-enum-conversion" to CFLAGS to workaround build errors
|
||||
because XLAL_ERROR implictly converts to different function
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return types.
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||||
|
||||
-------------------------------------------------------------------
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Wed May 27 22:34:40 UTC 2020 - Atri Bhattacharya <badshah400@gmail.com>
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||||
|
||||
- Fix package description.
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-------------------------------------------------------------------
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Mon Feb 3 01:32:43 UTC 2020 - Atri Bhattacharya <badshah400@gmail.com>
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||||
|
||||
- Update to version 6.25.1
|
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* MakeSFTs.c: fix incorrect XLAL error checks
|
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- Changes from version 6.25.0:
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* O3b release
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||||
- Update version numbers in BuildRequires and Requires in keeping
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with upstream.
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||||
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||||
-------------------------------------------------------------------
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Mon Jan 20 22:45:54 UTC 2020 - Atri Bhattacharya <badshah400@gmail.com>
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||||
|
||||
- Disable python2 builds to prepare for removal of py2 support;
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||||
switch Requires to python3 modules.
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-------------------------------------------------------------------
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||||
Tue Oct 1 14:13:06 UTC 2019 - Atri Bhattacharya <badshah400@gmail.com>
|
||||
|
||||
- Build packages for both python2 and python3.
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-------------------------------------------------------------------
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||||
Mon Jul 22 15:46:41 UTC 2019 - Atri Bhattacharya <badshah400@gmail.com>
|
||||
|
||||
- Add lalapps-fix-uninitialised-var.patch: Fix usage of
|
||||
uninitialised variables.
|
||||
|
||||
-------------------------------------------------------------------
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||||
Mon Jul 22 14:40:08 UTC 2019 - Atri Bhattacharya <badshah400@gmail.com>
|
||||
|
||||
- Update to version 6.24.0:
|
||||
* O3 release.
|
||||
- Drop patches incorporated upstream:
|
||||
* lalapps-gcc8-format-overflow-errors.patch
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||||
* lalapps-truncation-errors-with-gcc82.patch
|
||||
* lalapps-drop-abandoned-code.patch.
|
||||
|
||||
-------------------------------------------------------------------
|
||||
Fri Feb 8 13:32:21 UTC 2019 - badshah400@gmail.com
|
||||
|
||||
- Switch builds to python2.
|
||||
- Switch installable package name to use python{2,3}- naming
|
||||
scheme.
|
||||
|
||||
-------------------------------------------------------------------
|
||||
Fri Feb 8 13:01:54 UTC 2019 - badshah400@gmail.com
|
||||
|
||||
- Explicitly use python3- for Requires.
|
||||
|
||||
-------------------------------------------------------------------
|
||||
Thu Feb 7 14:59:25 UTC 2019 - badshah400@gmail.com
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||||
|
||||
- Update Requires for %{name}.
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||||
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||||
-------------------------------------------------------------------
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||||
Thu Feb 7 14:07:00 UTC 2019 - badshah400@gmail.com
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||||
|
||||
- Initial package
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187
lalapps.spec
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187
lalapps.spec
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@ -0,0 +1,187 @@
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#
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# spec file for package lalapps
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||||
#
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# Copyright (c) 2024 SUSE LLC
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#
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||||
# All modifications and additions to the file contributed by third parties
|
||||
# remain the property of their copyright owners, unless otherwise agreed
|
||||
# upon. The license for this file, and modifications and additions to the
|
||||
# file, is the same license as for the pristine package itself (unless the
|
||||
# license for the pristine package is not an Open Source License, in which
|
||||
# case the license is the MIT License). An "Open Source License" is a
|
||||
# license that conforms to the Open Source Definition (Version 1.9)
|
||||
# published by the Open Source Initiative.
|
||||
|
||||
# Please submit bugfixes or comments via https://bugs.opensuse.org/
|
||||
#
|
||||
|
||||
|
||||
%define skip_python2 1
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||||
# NEP 29: astropy, numpy, scipy do not have a python36 flavor package in TW
|
||||
%define skip_python36 1
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||||
Name: lalapps
|
||||
Version: 10.0.0
|
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Release: 0
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Summary: LSC Algorithm Library Applications
|
||||
License: GPL-2.0-or-later
|
||||
Group: Productivity/Scientific/Physics
|
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URL: https://wiki.ligo.org/Computing/DASWG/LALSuite
|
||||
Source: https://software.igwn.org/sources/source/lalsuite/%{name}-%{version}.tar.xz
|
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# PATCH-FIX-UPSTREAM lalapps-fix-uninitialised-var.patch badshah400@gmail.com -- Fix usage of uninitialised variable
|
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Patch0: lalapps-fix-uninitialised-var.patch
|
||||
# PATCH-FIX-UPSTREAM lalapps-disable-testWeave-for-non-x86_64.patch badshah400@gmail.com -- Disable Weave related tests on all but x86_64 where tolerance errors show up, see https://git.ligo.org/lscsoft/lalsuite/-/issues/105
|
||||
Patch2: lalapps-disable-testWeave-for-non-x86_64.patch
|
||||
BuildRequires: %{python_module astropy}
|
||||
BuildRequires: %{python_module devel}
|
||||
BuildRequires: %{python_module glue}
|
||||
BuildRequires: %{python_module lal >= 7.3.0}
|
||||
BuildRequires: %{python_module lalburst >= 2.0.1}
|
||||
BuildRequires: %{python_module lalframe >= 3.0.1}
|
||||
BuildRequires: %{python_module lalinference >= 4.1.3}
|
||||
BuildRequires: %{python_module lalmetaio >= 4.0.1}
|
||||
BuildRequires: %{python_module lalpulsar >= 6.0.1}
|
||||
BuildRequires: %{python_module matplotlib}
|
||||
BuildRequires: %{python_module numpy-devel}
|
||||
BuildRequires: %{python_module numpy}
|
||||
BuildRequires: %{python_module scipy}
|
||||
BuildRequires: cfitsio-devel
|
||||
BuildRequires: fdupes
|
||||
BuildRequires: openmpi-devel
|
||||
BuildRequires: pkgconfig
|
||||
BuildRequires: python-rpm-macros
|
||||
BuildRequires: swig
|
||||
BuildRequires: pkgconfig(fftw3)
|
||||
BuildRequires: pkgconfig(framel) >= 8.39.2
|
||||
BuildRequires: pkgconfig(gsl)
|
||||
BuildRequires: pkgconfig(lal) >= 7.3.0
|
||||
BuildRequires: pkgconfig(lalburst) >= 2.0.1
|
||||
BuildRequires: pkgconfig(lalframe) >= 3.0.1
|
||||
BuildRequires: pkgconfig(lalinference) >= 4.1.3
|
||||
BuildRequires: pkgconfig(lalinspiral) >= 4.0.2
|
||||
BuildRequires: pkgconfig(lalmetaio) >= 4.0.1
|
||||
BuildRequires: pkgconfig(lalpulsar) >= 6.0.1
|
||||
BuildRequires: pkgconfig(lalsimulation) >= 5.2.0
|
||||
# SECTION For tests
|
||||
BuildRequires: %{python_module pytest}
|
||||
BuildRequires: bc
|
||||
BuildRequires: lalpulsar-data
|
||||
Requires: python3-%{name} = %{version}
|
||||
# /SECTION
|
||||
# SECTION Required for Patch2
|
||||
BuildRequires: libtool
|
||||
# /SECTION
|
||||
# 32-bit no longer supported upstream
|
||||
ExcludeArch: %{ix86}
|
||||
%define python_subpackage_only 1
|
||||
%python_subpackages
|
||||
|
||||
%description
|
||||
The LSC Algorithm Library Applications for gravitational wave data analysis.
|
||||
This package contains applications that are built on tools in the LSC
|
||||
Algorithm Library.
|
||||
|
||||
%package -n python-%{name}
|
||||
Summary: LSC Algorithm Library Applications
|
||||
Group: Productivity/Scientific/Physics
|
||||
Requires: python-h5py
|
||||
Requires: python-lal >= 7.3.0
|
||||
Requires: python-lalburst >= 2.0.1
|
||||
Requires: python-lalframe >= 3.0.1
|
||||
Requires: python-lalinference >= 4.1.3
|
||||
Requires: python-lalmetaio >= 4.0.1
|
||||
Requires: python-lalpulsar >= 6.0.1
|
||||
Requires: python-ligo-lw
|
||||
Requires: python-ligo-segments
|
||||
Requires: python-matplotlib
|
||||
Requires: python-numpy
|
||||
Requires: python-scipy
|
||||
|
||||
%description -n python-%{name}
|
||||
The LSC Algorithm Library Applications for gravitational wave data analysis.
|
||||
This package contains applications that are built on tools in the LSC
|
||||
Algorithm Library.
|
||||
|
||||
This package contains the python files
|
||||
|
||||
%prep
|
||||
%autosetup -p1
|
||||
|
||||
%build
|
||||
# Patch2 touches autotool files
|
||||
autoreconf -fvi
|
||||
%{python_expand # Necessary to run %%configure for all active python flavors
|
||||
export PYTHON=%{_bindir}/$python
|
||||
mkdir ../$python
|
||||
cp -pr ./ ../$python
|
||||
pushd ../$python
|
||||
%configure --enable-swig
|
||||
%make_build
|
||||
popd
|
||||
}
|
||||
|
||||
%install
|
||||
%{python_expand # install for all active python flavors
|
||||
export PYTHON=$python
|
||||
pushd ../$python
|
||||
%make_install
|
||||
popd
|
||||
}
|
||||
|
||||
# env-based hashbang /usr/bin/env tclsh => /usr/bin/tclsh
|
||||
sed -Ei "1{s/env //}" %{buildroot}%{_bindir}/lalapps_CopySFTs
|
||||
|
||||
# SECTION EXPORT LAL SPECIFIC ENV VARIABLES
|
||||
# We do not use upstream's env files because they also set more generic
|
||||
# variables (e.g. PATH) which may ruin setups
|
||||
|
||||
# NUKE UPSTREAM ENV SCRIPTS
|
||||
rm %{buildroot}%{_sysconfdir}/%{name}-user-env.*
|
||||
|
||||
cat << EOF >> %{name}.sh
|
||||
export LALAPPS_PREFIX=%{_prefix}
|
||||
export LALAPPS_DATADIR=%{_datadir}/%{name}
|
||||
EOF
|
||||
|
||||
cat << EOF >> %{name}.csh
|
||||
setenv LALAPPS_PREFIX "%{_prefix}"
|
||||
setenv LALAPPS_DATADIR "%{_datadir}/%{name}"
|
||||
EOF
|
||||
|
||||
cat << EOF >> %{name}.fish
|
||||
set LALAPPS_PREFIX (echo "%{_prefix}" | %{_bindir}/sed -e 's| |:|g;')
|
||||
set LALAPPS_DATADIR (echo "%{_datadir}/%{name}" | %{_bindir}/sed -e 's| |:|g;')
|
||||
EOF
|
||||
|
||||
install -D -m0644 %{name}.sh %{buildroot}%{_sysconfdir}/profile.d/%{name}.sh
|
||||
install -D -m0644 %{name}.csh %{buildroot}%{_sysconfdir}/profile.d/%{name}.csh
|
||||
install -D -m0644 %{name}.fish %{buildroot}%{_sysconfdir}/profile.d/%{name}.fish
|
||||
|
||||
# /SECTION
|
||||
|
||||
# SECTION REMOVE STATIC LIB AND LIBTOOL ARCHIVE
|
||||
find %{buildroot}%{_libdir}/ -name "*.a" -delete -print
|
||||
find %{buildroot} -type f -name "*.la" -delete -print
|
||||
# /SECTION
|
||||
|
||||
%python_expand %fdupes %{buildroot}%{$python_sitearch}/%{name}/
|
||||
%fdupes %{buildroot}/%{_datadir}/%{name}/
|
||||
|
||||
%check
|
||||
%{python_expand #
|
||||
export PYTHON=$python
|
||||
pushd ../$python
|
||||
%make_build check
|
||||
popd
|
||||
}
|
||||
|
||||
%files -n %{name}
|
||||
%license COPYING
|
||||
%{_bindir}/*
|
||||
%{_datadir}/lalapps/
|
||||
%{_mandir}/man1/*
|
||||
%config %{_sysconfdir}/profile.d/%{name}.*
|
||||
|
||||
%files %{python_files %{name}}
|
||||
%{python_sitearch}/*
|
||||
|
||||
%changelog
|
||||
Loading…
Reference in New Issue
Block a user