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Accepting request 564518 from science

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OBS-URL: https://build.opensuse.org/request/show/564518
OBS-URL: https://build.opensuse.org/package/show/openSUSE:Factory/lapack?expand=0&rev=43
This commit is contained in:
Dominique Leuenberger
2018-01-20 10:24:41 +00:00
committed by Git OBS Bridge
parent e8ce52607e 0ce8a54fd5
commit fd2df114e8
4 changed files with 337 additions and 3 deletions
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2
lapack-man.spec
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@@ -1,7 +1,7 @@
#
# spec file for package lapack-man
#
# Copyright (c) 2017 SUSE LINUX GmbH, Nuernberg, Germany.
# Copyright (c) 2018 SUSE LINUX GmbH, Nuernberg, Germany.
#
# All modifications and additions to the file contributed by third parties
# remain the property of their copyright owners, unless otherwise agreed

6
lapack.changes
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@@ -1,3 +1,9 @@
-------------------------------------------------------------------
Fri Jan 12 14:29:36 UTC 2018 - rguenther@suse.com
- Package lapack_testing.py from lapack 3.8.0 with adjusted interpreter
and adjust BuildRequires to python3. [bnc#1075766]
-------------------------------------------------------------------
Wed May 31 21:39:51 UTC 2017 - jengelh@inai.de

6
lapack.spec
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@@ -1,7 +1,7 @@
#
# spec file for package lapack
#
# Copyright (c) 2017 SUSE LINUX GmbH, Nuernberg, Germany.
# Copyright (c) 2018 SUSE LINUX GmbH, Nuernberg, Germany.
#
# All modifications and additions to the file contributed by third parties
# remain the property of their copyright owners, unless otherwise agreed
@@ -24,10 +24,11 @@ License: BSD-3-Clause
Group: Development/Libraries/Parallel
Url: http://www.netlib.org/lapack/
Source0: http://www.netlib.org/lapack/%{name}-%{version}.tgz
Source1: lapack_testing.py
Source99: baselibs.conf
Patch1: lapack-3.2.2.patch
BuildRequires: gcc-fortran
BuildRequires: python
BuildRequires: python3
BuildRequires: update-alternatives
Requires(pre): update-alternatives
BuildRoot: %{_tmppath}/%{name}-%{version}-build
@@ -238,6 +239,7 @@ mv ../liblapacke.a liblapacke.a
# fix wrong end of line
sed -i 's/\r//' LICENSE
cd ..
cp %{SOURCE1} .
make lapack_testing \
OPTS="%{optflags} $PRECFLAGS" \
NOOPT="%{optflags} $PRECFLAGS -O0"

326
lapack_testing.py Normal file
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@@ -0,0 +1,326 @@
#!/usr/bin/python3
# -*- coding: utf-8 -*-
###############################################################################
# lapack_testing.py
###############################################################################
from __future__ import print_function
from subprocess import Popen, STDOUT, PIPE
import os, sys, math
import getopt
# Arguments
try:
opts, args = getopt.getopt(sys.argv[1:], "hd:srep:t:n",
["help", "dir", "short", "run", "error","prec=","test=","number"])
except getopt.error as msg:
print(msg)
print("for help use --help")
sys.exit(2)
short_summary=0
with_file=1
just_errors = 0
prec='x'
test='all'
only_numbers=0
test_dir='TESTING'
bin_dir='bin/Release'
abs_bin_dir=os.path.normpath(os.path.join(os.getcwd(),bin_dir))
for o, a in opts:
if o in ("-h", "--help"):
print(sys.argv[0]+" [-h|--help] [-d dir |--dir dir] [-s |--short] [-r |--run] [-e |--error] [-p p |--prec p] [-t test |--test test] [-n | --number]")
print(" - h is to print this message")
print(" - r is to use to run the LAPACK tests then analyse the output (.out files). By default, the script will not run all the LAPACK tests")
print(" - d [dir] is to indicate where is the LAPACK testing directory (.out files). By default, the script will use .")
print(" LEVEL OF OUTPUT")
print(" - x is to print a detailed summary")
print(" - e is to print only the error summary")
print(" - s is to print a short summary")
print(" - n is to print the numbers of failing tests (turn on summary mode)")
print(" SECLECTION OF TESTS:")
print(" - p [s/c/d/z/x] is to indicate the PRECISION to run:")
print(" s=single")
print(" d=double")
print(" sd=single/double")
print(" c=complex")
print(" z=double complex")
print(" cz=complex/double complex")
print(" x=all [DEFAULT]")
print(" - t [lin/eig/mixed/rfp/all] is to indicate which TEST FAMILY to run:")
print(" lin=Linear Equation")
print(" eig=Eigen Problems")
print(" mixed=mixed-precision")
print(" rfp=rfp format")
print(" all=all tests [DEFAULT]")
print(" EXAMPLES:")
print(" ./lapack_testing.py -n")
print(" Will return the numbers of failed tests by analyzing the LAPACK output")
print(" ./lapack_testing.py -n -r -p s")
print(" Will return the numbers of failed tests in REAL precision by running the LAPACK Tests then analyzing the output")
print(" ./lapack_testing.py -n -p s -t eig ")
print(" Will return the numbers of failed tests in REAL precision by analyzing only the LAPACK output of EIGEN testings")
print("Written by Julie Langou (June 2011) ")
sys.exit(0)
else:
if o in ("-s", "--short"):
short_summary = 1
if o in ("-r", "--run"):
with_file = 0
if o in ("-e", "--error"):
just_errors = 1
if o in ( '-p', '--prec' ):
prec = a
if o in ( '-d', '--dir' ):
test_dir = a
if o in ( '-t', '--test' ):
test = a
if o in ( '-n', '--number' ):
only_numbers = 1
short_summary = 1
# process options
os.chdir(test_dir)
execution=1
summary="\n\t\t\t--> LAPACK TESTING SUMMARY <--\n";
if with_file: summary+= "\t\tProcessing LAPACK Testing output found in the "+test_dir+" directory\n";
summary+="SUMMARY \tnb test run \tnumerical error \tother error \n";
summary+="================ \t===========\t=================\t================ \n";
nb_of_test=0
# Add current directory to the path for subshells of this shell
# Allows the popen to find local files in both windows and unixes
os.environ["PATH"] = os.environ["PATH"]+":."
# Define a function to open the executable (different filenames on unix and Windows)
def run_summary_test( f, cmdline, short_summary):
nb_test_run=0
nb_test_fail=0
nb_test_illegal=0
nb_test_info=0
if (with_file):
if not os.path.exists(cmdline):
error_message=cmdline+" file not found"
r=1
if short_summary: return [nb_test_run,nb_test_fail,nb_test_illegal,nb_test_info]
else:
pipe = open(cmdline,'r')
r=0
else:
if os.name != 'nt':
cmdline='./' + cmdline
else :
cmdline=abs_bin_dir+os.path.sep+cmdline
outfile=cmdline.split()[4]
#pipe = open(outfile,'w')
p = Popen(cmdline, shell=True)#, stdout=pipe)
p.wait()
#pipe.close()
r=p.returncode
pipe = open(outfile,'r')
error_message=cmdline+" did not work"
if r != 0 and not with_file:
print("---- TESTING " + cmdline.split()[0] + "... FAILED(" + error_message +") !")
for line in pipe.readlines():
f.write(str(line))
elif r != 0 and with_file and not short_summary:
print("---- WARNING: please check that you have the LAPACK output : "+cmdline+"!")
print("---- WARNING: with the option -r, we can run the LAPACK testing for you")
# print "---- "+error_message
else:
for line in pipe.readlines():
f.write(str(line))
words_in_line=line.split()
if (line.find("run")!=-1):
# print line
whereisrun=words_in_line.index("run)")
nb_test_run+=int(words_in_line[whereisrun-2])
if (line.find("out of")!=-1):
if (short_summary==0): print(line, end=' ')
whereisout= words_in_line.index("out")
nb_test_fail+=int(words_in_line[whereisout-1])
if ((line.find("illegal")!=-1) or (line.find("Illegal")!=-1)):
if (short_summary==0):print(line, end=' ')
nb_test_illegal+=1
if (line.find(" INFO")!=-1):
if (short_summary==0):print(line, end=' ')
nb_test_info+=1
if (with_file==1):
pipe.close()
f.flush();
return [nb_test_run,nb_test_fail,nb_test_illegal,nb_test_info]
# If filename cannot be opened, send output to sys.stderr
filename = "testing_results.txt"
try:
f = open(filename, 'w')
except IOError:
f = sys.stdout
if (short_summary==0):
print(" ")
print("---------------- Testing LAPACK Routines ----------------")
print(" ")
print("-- Detailed results are stored in", filename)
dtypes = (
("s", "d", "c", "z"),
("REAL ", "DOUBLE PRECISION", "COMPLEX ", "COMPLEX16 "),
)
if prec=='s':
range_prec=[0]
elif prec=='d':
range_prec=[1]
elif prec=='sd':
range_prec=[0,1]
elif prec=='c':
range_prec=[2]
elif prec=='z':
range_prec=[3]
elif prec=='cz':
range_prec=[2,3]
else:
prec='x';
range_prec=list(range(4))
if test=='lin':
range_test=[16]
elif test=='mixed':
range_test=[17]
range_prec=[1,3]
elif test=='rfp':
range_test=[18]
elif test=='eig':
range_test=list(range(16))
else:
range_test=list(range(19))
list_results = [
[0, 0, 0, 0, 0],
[0, 0, 0, 0, 0],
[0, 0, 0, 0, 0],
[0, 0, 0, 0, 0],
]
for dtype in range_prec:
letter = dtypes[0][dtype]
name = dtypes[1][dtype]
if (short_summary==0):
print(" ")
print("------------------------- %s ------------------------" % name)
print(" ")
sys.stdout.flush()
dtests = (
("nep", "sep", "se2", "svd",
letter+"ec",letter+"ed",letter+"gg",
letter+"gd",letter+"sb",letter+"sg",
letter+"bb","glm","gqr",
"gsv","csd","lse",
letter+"test", letter+dtypes[0][dtype-1]+"test",letter+"test_rfp"),
("Nonsymmetric-Eigenvalue-Problem", "Symmetric-Eigenvalue-Problem", "Symmetric-Eigenvalue-Problem-2-stage", "Singular-Value-Decomposition",
"Eigen-Condition","Nonsymmetric-Eigenvalue","Nonsymmetric-Generalized-Eigenvalue-Problem",
"Nonsymmetric-Generalized-Eigenvalue-Problem-driver", "Symmetric-Eigenvalue-Problem", "Symmetric-Eigenvalue-Generalized-Problem",
"Banded-Singular-Value-Decomposition-routines", "Generalized-Linear-Regression-Model-routines", "Generalized-QR-and-RQ-factorization-routines",
"Generalized-Singular-Value-Decomposition-routines", "CS-Decomposition-routines", "Constrained-Linear-Least-Squares-routines",
"Linear-Equation-routines", "Mixed-Precision-linear-equation-routines","RFP-linear-equation-routines"),
(letter+"nep", letter+"sep", letter+"se2", letter+"svd",
letter+"ec",letter+"ed",letter+"gg",
letter+"gd",letter+"sb",letter+"sg",
letter+"bb",letter+"glm",letter+"gqr",
letter+"gsv",letter+"csd",letter+"lse",
letter+"test", letter+dtypes[0][dtype-1]+"test",letter+"test_rfp"),
)
for dtest in range_test:
nb_of_test=0
# NEED TO SKIP SOME PRECISION (namely s and c) FOR PROTO MIXED PRECISION TESTING
if dtest==17 and (letter=="s" or letter=="c"):
continue
if (with_file==1):
cmdbase=dtests[2][dtest]+".out"
else:
if dtest==16:
# LIN TESTS
cmdbase="xlintst"+letter+" < "+dtests[0][dtest]+".in > "+dtests[2][dtest]+".out"
elif dtest==17:
# PROTO LIN TESTS
cmdbase="xlintst"+letter+dtypes[0][dtype-1]+" < "+dtests[0][dtest]+".in > "+dtests[2][dtest]+".out"
elif dtest==18:
# PROTO LIN TESTS
cmdbase="xlintstrf"+letter+" < "+dtests[0][dtest]+".in > "+dtests[2][dtest]+".out"
else:
# EIG TESTS
cmdbase="xeigtst"+letter+" < "+dtests[0][dtest]+".in > "+dtests[2][dtest]+".out"
if (not just_errors and not short_summary):
print("Testing "+name+" "+dtests[1][dtest]+"-"+cmdbase, end=' ')
# Run the process: either to read the file or run the LAPACK testing
nb_test = run_summary_test(f, cmdbase, short_summary)
list_results[0][dtype]+=nb_test[0]
list_results[1][dtype]+=nb_test[1]
list_results[2][dtype]+=nb_test[2]
list_results[3][dtype]+=nb_test[3]
got_error=nb_test[1]+nb_test[2]+nb_test[3]
if (not short_summary):
if (nb_test[0]>0 and just_errors==0):
print("passed: "+str(nb_test[0]))
if (nb_test[1]>0):
print("failing to pass the threshold: "+str(nb_test[1]))
if (nb_test[2]>0):
print("Illegal Error: "+str(nb_test[2]))
if (nb_test[3]>0):
print("Info Error: "+str(nb_test[3]))
if (got_error>0 and just_errors==1):
print("ERROR IS LOCATED IN "+name+" "+dtests[1][dtest]+" [ "+cmdbase+" ]")
print("")
if (just_errors==0):
print("")
# elif (got_error>0):
# print dtests[2][dtest]+".out \t"+str(nb_test[1])+"\t"+str(nb_test[2])+"\t"+str(nb_test[3])
sys.stdout.flush()
if (list_results[0][dtype] > 0 ):
percent_num_error=float(list_results[1][dtype])/float(list_results[0][dtype])*100
percent_error=float(list_results[2][dtype]+list_results[3][dtype])/float(list_results[0][dtype])*100
else:
percent_num_error=0
percent_error=0
summary+=name+"\t"+str(list_results[0][dtype])+"\t\t"+str(list_results[1][dtype])+"\t("+"%.3f" % percent_num_error+"%)\t"+str(list_results[2][dtype]+list_results[3][dtype])+"\t("+"%.3f" % percent_error+"%)\t""\n"
list_results[0][4]+=list_results[0][dtype]
list_results[1][4]+=list_results[1][dtype]
list_results[2][4]+=list_results[2][dtype]
list_results[3][4]+=list_results[3][dtype]
if only_numbers==1:
print(str(list_results[1][4])+"\n"+str(list_results[2][4]+list_results[3][4]))
else:
print(summary)
if (list_results[0][4] > 0 ):
percent_num_error=float(list_results[1][4])/float(list_results[0][4])*100
percent_error=float(list_results[2][4]+list_results[3][4])/float(list_results[0][4])*100
else:
percent_num_error=0
percent_error=0
if (prec=='x'):
print("--> ALL PRECISIONS\t"+str(list_results[0][4])+"\t\t"+str(list_results[1][4])+"\t("+"%.3f" % percent_num_error+"%)\t"+str(list_results[2][4]+list_results[3][4])+"\t("+"%.3f" % percent_error+"%)\t""\n")
if list_results[0][4] == 0:
print("NO TESTS WERE ANALYZED, please use the -r option to run the LAPACK TESTING")
# This may close the sys.stdout stream, so make it the last statement
f.close()