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nauty 2.9.1

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This commit is contained in:
Jan Engelhardt
2025-10-11 20:46:55 +02:00
parent 6958dcc709
commit 8d14593324
7 changed files with 56 additions and 60 deletions
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nauty.changes
+21
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@@ -1,3 +1,24 @@
-------------------------------------------------------------------
Sat Oct 11 18:46:48 UTC 2025 - Jan Engelhardt <jengelh@inai.de>
- Update to release 2.9.1
* pickg/countg --HH counts hexagons (6-cycles) in undirected
graphs.
* Fixed pickg/countg documentation for colouring parameters.
* pickg/countg -Y works faster if an low upper limit is given.
* Added "c" option to genposetg to select only connected
posets.
* countneg -n (but not -e) can now handle incremental sparse
format.
* The space efficiency of uniqg has improved to 48 bytes per
isomorphism class.
* listg -T writes a one-line format like 0--1,2--3,... as
required by the program 'tutte'.
* dreadnaut: The options related to invariants have been
separated into options for digraphs and options for
undirected graphs. See online changelog for details.
- Delete nauty-uninitialized.diff (merged)
-------------------------------------------------------------------
Sun Jun 22 21:03:59 UTC 2025 - Jan Engelhardt <jengelh@inai.de>
nauty.spec
+8 -9
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@@ -17,9 +17,9 @@
Name: nauty
%define lname libnauty-2_8_9
%define fuv 2_8_9
Version: 2.8.9
%define lname libnauty-2_9_1
%define fuv 2_9_1
Version: 2.9.1
Release: 0
Summary: Tools for computing automorphism groups of graphs
License: Apache-2.0
@@ -27,7 +27,6 @@ Group: Productivity/Scientific/Math
URL: https://pallini.di.uniroma1.it/
Source: https://pallini.di.uniroma1.it/nauty%fuv.tar.gz
Patch1: nauty-am.diff
Patch2: nauty-uninitialized.diff
Patch3: autoconf-2.72.patch
Patch4: gcc15.patch
BuildRequires: automake
@@ -74,24 +73,24 @@ applications that want to make use of libnauty.
%build
rm -f aclocal.m4 makefile
autoreconf -fi
export CFLAGS="%optflags -Wno-unused"
%configure --enable-generic
#export CFLAGS="%optflags -Wno-unused"
%configure --enable-generic --disable-popcnt --disable-clz
%make_build
%install
%make_install
rm -f "%buildroot/%_libdir"/*.la
%fdupes %{buildroot}/${_bindir}
%fdupes %buildroot/%_bindir
%ldconfig_scriptlets -n %lname
%files
%_bindir/*
%doc changes24-28.txt
%doc changes24-29.txt
%license COPYRIGHT
%files -n %lname
%_libdir/libnauty*-2.8.9.so
%_libdir/libnauty*-%version.so
%files devel
%_includedir/nauty/
autoconf-2.72.patch
+8 -8
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@@ -8,15 +8,15 @@ See also https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=7643b42096da1f4403
configure.ac | 1 +
1 file changed, 1 insertion(+)
Index: nauty2_8_9/configure.ac
Index: nauty2_9_1/configure.ac
===================================================================
--- nauty2_8_9.orig/configure.ac
+++ nauty2_8_9/configure.ac
@@ -178,6 +178,7 @@ dnl we need AC_SYS_LARGEFILE and AC_FU
AC_SYS_LARGEFILE
AS_IF([test "x$ac_cv_sys_file_offset_bits" = "xno"],[ac_cv_sys_file_offset_bits=0])
--- nauty2_9_1.orig/configure.ac
+++ nauty2_9_1/configure.ac
@@ -199,6 +199,7 @@ nauty_largefile=0
AS_IF([test "x$ac_cv_sys_largefile_opts" = "x-D_FILE_OFFSET_BITS=64"],[nauty_largefile=1])
AS_IF([test "x$ac_cv_sys_largefile_opts" = "x-D_LARGE_FILES=1"],[nauty_largefile=2])
AS_IF([test "x$ac_cv_sys_file_offset_bits" = "x"],[ac_cv_sys_file_offset_bits=0])
+ac_cv_sys_file_offset_bits=64
AC_SUBST(ac_cv_sys_file_offset_bits)
AS_IF([test "x$ac_cv_sys_largefile_source" = "xno"],[ac_cv_sys_largefile_source=0])
AS_IF([test "x$ac_cv_sys_largefile_source" = "x"],[ac_cv_sys_largefile_source=0])
AS_IF([test "x$user_cflags" = x || test "x$user_cflags" = x-m32],
nauty-am.diff
+16 -13
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@@ -1,19 +1,21 @@
From: Jan Engelhardt <jengelh@inai.de>
Date: 2019-08-24 18:40 +0200
build: produce shared libraries
Partly based on Debian's upstream-autotoolization.patch.
`./configure --disable-static` is broken: make won't run to completion.
`./configure --enable-generic` is broken: still uses -march=native.
Rewrite in automake.
---
Makefile.am | 123 +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
configure.ac | 11 ++++-
2 files changed, 132 insertions(+), 2 deletions(-)
Index: nauty2_8_9/Makefile.am
Index: nauty2_9_1/Makefile.am
===================================================================
--- /dev/null
+++ nauty2_8_9/Makefile.am
@@ -0,0 +1,123 @@
+++ nauty2_9_1/Makefile.am
@@ -0,0 +1,124 @@
+ACLOCAL_AMFLAGS = -I m4
+bin_PROGRAMS = addedgeg amtog assembleg biplabg catg checks6 complg converseg copyg \
+ countg countneg cubhamg deledgeg delptg directg dreadnaut dretodot \
@@ -88,6 +90,7 @@ Index: nauty2_8_9/Makefile.am
+subdivideg_LDADD = libnauty.la
+twohamg_LDADD = libnauty.la
+underlyingg_LDADD = libnauty.la
+uniqg_SOURCES = uniqg.c nausha.c
+uniqg_LDADD = libnauty.la
+vcolg_LDADD = libnauty.la
+watercluster2_LDADD = libnauty.la
@@ -137,13 +140,13 @@ Index: nauty2_8_9/Makefile.am
+libnautyW1_la_SOURCES = ${libnauty_la_SOURCES}
+libnautyW1_la_LIBADD = -lpthread
+libnautyW1_la_LDFLAGS = ${libnauty_la_LDFLAGS}
Index: nauty2_8_9/configure.ac
Index: nauty2_9_1/configure.ac
===================================================================
--- nauty2_8_9.orig/configure.ac
+++ nauty2_8_9/configure.ac
--- nauty2_9_1.orig/configure.ac
+++ nauty2_9_1/configure.ac
@@ -1,6 +1,12 @@
# Process this file with autoconf to produce a configure script.
AC_INIT([nauty],[2.8.9],[brendan.mckay@anu.edu.au])
AC_INIT([nauty],[2.9.1],[brendan.mckay@anu.edu.au])
AC_CONFIG_SRCDIR([nauty-h.in])
+AC_CONFIG_AUX_DIR([build-aux])
+AC_CONFIG_MACRO_DIR([m4])
@@ -161,9 +164,9 @@ Index: nauty2_8_9/configure.ac
-AC_SUBST($2)])
+AC_SUBST([$2])])
dnl Check for noreturn attribute. Note that this is the attribute for C and
dnl might not work for C++. nauty.h does not use it.
@@ -311,6 +317,7 @@ AC_SUBST(Qlibs_or_null)
# Test for declaration with _POSIX_C_SOURCE=200809L and _XOPEN_SOURCE=500
@@ -307,6 +313,7 @@ AC_SUBST(Qlibs_or_null)
AC_SUBST(TLSQlibs_or_null)
AC_SUBST(testprogs)
AC_SUBST(nautests)
@@ -171,7 +174,7 @@ Index: nauty2_8_9/configure.ac
dnl Checks for library functions.
AC_CHECK_FUNC(isatty,have_isatty=1,have_isatty=0)
@@ -567,7 +574,7 @@ AC_SUBST(have_gunzip)
@@ -571,7 +578,7 @@ AC_SUBST(have_gunzip)
LT_INIT
nauty-uninitialized.diff
-27
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@@ -1,27 +0,0 @@
From: Jan Engelhardt <jengelh@inai.de>
Date: 2017-09-14 22:15:05.095341778 +0200
patch some real bad code
[ 19s] traces.c: In function 'refine_tr_refine':
[ 19s] traces.c:5316:12: warning: 'TraceInd' is used uninitialized in this function [-Wuninitialized]
[ 19s] return TraceInd;
[ 40s] checks6.c: In function 'seemsbad':
[ 40s] checks6.c:124:1: warning: control reaches end of non-void function [-Wreturn-type]
[ 40s] }
---
checks6.c | 1 +
1 file changed, 1 insertion(+)
Index: nauty2_8_8/checks6.c
===================================================================
--- nauty2_8_8.orig/checks6.c
+++ nauty2_8_8/checks6.c
@@ -121,6 +121,7 @@ seemsbad(char *s)
else
return FALSE;
}
+ return FALSE;
}
/***********************************************************************/
nauty2_8_9.tar.gz
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nauty2_9_1.tar.gz
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