Accepting request 935928 from devel:languages:python:numeric

OBS-URL: https://build.opensuse.org/request/show/935928
OBS-URL: https://build.opensuse.org/package/show/openSUSE:Factory/python-sherpa?expand=0&rev=11

python-sherpa.changes

@@ -1,3 +1,41 @@
+-------------------------------------------------------------------
+Fri Dec  3 13:21:21 UTC 2021 - Guillaume GARDET <guillaume.gardet@opensuse.org>
+
+- Update to 4.14.0:
+  * enhancements:
+    - filtering and grouping area for binned (1D) spectral data has been improved
+    with changes to the default behavior and many bug fixes resulting in changes
+    to the statistics, degrees-of-freedom and energy flux in comparison to the
+    previous version for the same data with the same filter.
+    - updates to allow users to change the hard limits of XSPEC model parameters
+    - the sample_flux routine now returns correct information for the clip column
+  * documentation changes:
+    - improved PHA simulation documentation
+    - improved Filtering and grouping of PHA data documentation
+    - added sherpa.image module documentation
+    - added section on running tests to developer docs
+  * Infrastructure Changes:
+    - updates to support Apple ARM
+    - update to support Xspec version 12.12
+    - update fftw from version 3.3.8 to 3.3.9
+    - clean up of compiler and sphinx warnings
+    - changes to support gcc 9.3.0 in conda defaults
+    - updates to support python 3.9 including readline 8.1 upgrade, numpy minimum
+    1.19 (numpy 1.18 minimum for python 3.7/8)
+    - test infrastructure clean up and updates
+  * bug fixes:
+    - updates to fix several 'unable to parse region string: None' errors
+    - fix issue where save_all() of a loaded image with no region filter would fail
+    on reload
+    - fixed issue with plot_model() being called before notice or ignore could
+    lead to filters not getting applied
+    - fix to error out instead of crash when grouping data using an unsupported
+    method
+- Drop upstream patch:
+  * sherpa-pr1227-astropy43.patch
+- Refresh patch:
+  * reproducible.patch
+
 -------------------------------------------------------------------
 Thu Aug  5 19:36:45 UTC 2021 - Ben Greiner <code@bnavigator.de>
 

python-sherpa.spec

@@ -20,15 +20,13 @@
 %define         skip_python2 1
 %define         skip_python36 1
 Name:           python-sherpa
-Version:        4.13.1
+Version:        4.14.0
 Release:        0
 Summary:        Modeling and fitting package for scientific data analysis
 License:        GPL-3.0-only
 URL:            https://github.com/sherpa/sherpa/
 Source:         https://github.com/sherpa/sherpa/archive/%{version}.tar.gz#/sherpa-%{version}.tar.gz
 Patch1:         reproducible.patch
-# PATCH-FIX-UPSTREAM sherpa-pr1227-astropy43.patch -- gh#sherpa/sherpa#1227
-Patch2:         https://github.com/sherpa/sherpa/pull/1227.patch#/sherpa-pr1227-astropy43.patch
 BuildRequires:  %{python_module devel}
 BuildRequires:  %{python_module numpy-devel}
 BuildRequires:  %{python_module setuptools}
@@ -39,7 +37,8 @@ BuildRequires:  flex
 BuildRequires:  gcc-c++
 BuildRequires:  gcc-fortran
 BuildRequires:  python-rpm-macros
-Requires:       python-numpy
+# 4.14.0 requires numpy minimum 1.19 (numpy 1.18 minimum for python 3.7/8)
+Requires:       python-numpy >= 1.18
 Requires(post): update-alternatives
 Requires(postun):update-alternatives
 ExcludeArch:    %{ix86}

reproducible.patch

@@ -1,7 +1,7 @@
-Index: sherpa-4.12.0/extern/fftw-3.3.8/configure
+Index: sherpa-4.12.0/extern/fftw-3.3.9/configure
 ===================================================================
---- sherpa-4.12.0.orig/extern/fftw-3.3.8/configure
-+++ sherpa-4.12.0/extern/fftw-3.3.8/configure
+--- sherpa-4.12.0.orig/extern/fftw-3.3.9/configure
++++ sherpa-4.12.0/extern/fftw-3.3.9/configure
 @@ -14506,7 +14506,7 @@ main ()
  }
  _ACEOF
@@ -11,10 +11,10 @@ Index: sherpa-4.12.0/extern/fftw-3.3.8/configure
  else
    ax_cv_c_flags__mtune_native=no
  fi
-Index: sherpa-4.12.0/extern/fftw-3.3.8/m4/ax_cc_maxopt.m4
+Index: sherpa-4.12.0/extern/fftw-3.3.9/m4/ax_cc_maxopt.m4
 ===================================================================
---- sherpa-4.12.0.orig/extern/fftw-3.3.8/m4/ax_cc_maxopt.m4
-+++ sherpa-4.12.0/extern/fftw-3.3.8/m4/ax_cc_maxopt.m4
+--- sherpa-4.12.0.orig/extern/fftw-3.3.9/m4/ax_cc_maxopt.m4
++++ sherpa-4.12.0/extern/fftw-3.3.9/m4/ax_cc_maxopt.m4
 @@ -73,7 +73,7 @@ if test "$ac_test_CFLAGS" != "set"; then
       CFLAGS="-O3 -fomit-frame-pointer"
  

sherpa-4.13.1.tar.gz

@@ -1,3 +0,0 @@
-version https://git-lfs.github.com/spec/v1
-oid sha256:2951d28c9012c90f9ba26ff0e989762843f574211f48f04c50f735bafa2dffed
-size 12637455

sherpa-4.14.0.tar.gz

@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:dc093e66af091f3d77927e27a36f404819d224646d0e4873029a85ecc8ea334d
+size 13071671

sherpa-pr1227-astropy43.patch

@@ -1,32 +0,0 @@
-From 630574022f538c86265ba01c283b8ebc39ce41a0 Mon Sep 17 00:00:00 2001
-From: Douglas Burke <dburke.gw@gmail.com>
-Date: Mon, 26 Jul 2021 16:10:25 -0400
-Subject: [PATCH] Support AstroPy 4.3 for tests
-
-The FITS checking meant that a test that created a test FITS file
-was no-longer valid for AstroPy, so tweak the output to appease
-both AstroPy 4.3 and fverify (at least for the header lines, it
-still claims the fil character is wrong but this is less important).
----
- sherpa/astro/io/tests/test_io.py | 8 ++++++--
- 1 file changed, 6 insertions(+), 2 deletions(-)
-
-diff --git a/sherpa/astro/io/tests/test_io.py b/sherpa/astro/io/tests/test_io.py
-index daa52d096d..a2bf6fdc93 100644
---- a/sherpa/astro/io/tests/test_io.py
-+++ b/sherpa/astro/io/tests/test_io.py
-@@ -150,8 +150,12 @@ def fake_rmf(outfile):
-     def hdr(key, value):
-         if isinstance(value, str):
-             value = "'{}'".format(value)
--        elif isinstance(value, bool):
--            value = 'T' if value else 'F'
-+        else:
-+            if isinstance(value, bool):
-+                value = 'T' if value else 'F'
-+
-+            # add spacing to make FVERIFY happy
-+            value = f"{str(value):>20s}"
- 
-         out = "{:8s}= {}".format(key, value)
-         return out.ljust(80)