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Accepting request 1059941 from home:bnavigator:branches:devel:languages:python:numeric

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- Update to 4.15.0
  * This release of Sherpa includes various enhancements,
    documentation updates,  bug fixes, and infrastructure changes.
  ## Enhancements:
  * Improved validation of arguments when creating Data objects:
    - arrays sent to Data objects are now converted to ndarrays
    - the independent axis is now made read-only
    - the size of a data object is now fixed.
  * Filter setting with notice/ignore are reported to the screen
    for the users of the UI layer.
  * Increased test coverage for plotting
  ## Documentation changes:
  * updated readthedocs to use pip and pytest instead of setup.py
  * several updates to documentation, including updates to
    fake_pha, calc_ftest, calc_mlr
  ## Infrastructure changes:
  * Drop support for Python 3.7
  * Updates to start creating Python 3.10 Conda packages.
  * Use Numpy 1.20 for Python 3.8/3.9 and Numpy 1.21 for Python
    3.10.
  * Moves toward PEP-517 with some distutils cleanup and more
    configuration moved from setup.py to setup.cfg
  * Various improvements to the GitHub Actions and GitLab workflows
  ## Bug fixes:
  * Ensure chi2xspecvar errors match XSPEC when 0 counts are
    present during background subtraction
  * Remove model instances from the global symbol table when clean
    is called
  * Addresses new warnings in the tests for Matplotlib 3.6.0 and
    AstroPy 5.1

OBS-URL: https://build.opensuse.org/request/show/1059941
OBS-URL: https://build.opensuse.org/package/show/devel:languages:python:numeric/python-sherpa?expand=0&rev=27
This commit is contained in:
Dirk Mueller 2023-01-20 22:42:00 +00:00 committed by Git OBS Bridge
parent 6951b439d9
commit f06ed7f1b8
7 changed files with 59 additions and 44 deletions
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44
python-sherpa.changes
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@ -1,3 +1,47 @@
-------------------------------------------------------------------
Fri Jan 20 10:59:30 UTC 2023 - Ben Greiner <code@bnavigator.de>
- Update to 4.15.0
* This release of Sherpa includes various enhancements,
documentation updates, bug fixes, and infrastructure changes.
## Enhancements:
* Improved validation of arguments when creating Data objects:
- arrays sent to Data objects are now converted to ndarrays
- the independent axis is now made read-only
- the size of a data object is now fixed.
* Filter setting with notice/ignore are reported to the screen
for the users of the UI layer.
* Increased test coverage for plotting
## Documentation changes:
* updated readthedocs to use pip and pytest instead of setup.py
* several updates to documentation, including updates to
fake_pha, calc_ftest, calc_mlr
## Infrastructure changes:
* Drop support for Python 3.7
* Updates to start creating Python 3.10 Conda packages.
* Use Numpy 1.20 for Python 3.8/3.9 and Numpy 1.21 for Python
3.10.
* Moves toward PEP-517 with some distutils cleanup and more
configuration moved from setup.py to setup.cfg
* Various improvements to the GitHub Actions and GitLab workflows
## Bug fixes:
* Ensure chi2xspecvar errors match XSPEC when 0 counts are
present during background subtraction
* Remove model instances from the global symbol table when clean
is called
* Addresses new warnings in the tests for Matplotlib 3.6.0 and
AstroPy 5.1
* Minor copy and paste error in fake_pha docstring
* Test issues in test_fake_pha.py due to randomness
## Caveats
* There are known issues (#1602, #1605, #1606) in the
histogram1d/histogram2d functions leading to failures which
were not fully addressed in this release (see the failed case
in the second histogram1d example). This is not the Sherpa core
functionality and numpy.histogram can be used if needed.
- Drop reproducible.patch: the patched fftw sources are not used in
this build.
-------------------------------------------------------------------
Mon Aug 8 15:24:05 UTC 2022 - Ben Greiner <code@bnavigator.de>

21
python-sherpa.spec
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@ -1,7 +1,7 @@
#
# spec file for package python-sherpa
#
# Copyright (c) 2022 SUSE LLC
# Copyright (c) 2023 SUSE LLC
#
# All modifications and additions to the file contributed by third parties
# remain the property of their copyright owners, unless otherwise agreed
@ -18,17 +18,15 @@
# python311 does not bundle setuptools < 60
%define skip_python311 1
%define test_data_commit 57cae742c7642494b51c26ba3f27935bbcc0116b
Name: python-sherpa
Version: 4.14.1
Version: 4.15.0
Release: 0
Summary: Modeling and fitting package for scientific data analysis
License: GPL-3.0-only
URL: https://github.com/sherpa/sherpa/
Source0: https://github.com/sherpa/sherpa/archive/%{version}.tar.gz#/sherpa-%{version}.tar.gz
Source1: https://github.com/sherpa/sherpa-test-data/archive/%{test_data_commit}.tar.gz#/sherpa-test-data-%{test_data_commit}.tar.gz
Patch1: reproducible.patch
BuildRequires: %{python_module devel >= 3.7}
Source1: https://github.com/sherpa/sherpa-test-data/archive/refs/tags/%{version}.tar.gz#/sherpa-test-data-%{version}.tar.gz
BuildRequires: %{python_module devel >= 3.8}
BuildRequires: %{python_module numpy-devel >= 1.19}
BuildRequires: %{python_module pip}
BuildRequires: %{python_module wheel}
@ -37,14 +35,13 @@ BuildRequires: fdupes
BuildRequires: fftw3-devel
BuildRequires: flex
BuildRequires: gcc-c++
BuildRequires: gcc-fortran
BuildRequires: python-rpm-macros
Requires: python-numpy >= 1.19
Requires(post): update-alternatives
Requires(postun):update-alternatives
ExcludeArch: %{ix86} %{arm}
# SECTION test requirements
BuildRequires: %{python_module pytest >= 3.3}
BuildRequires: %{python_module pytest >= 5}
BuildRequires: %{python_module pytest-xvfb}
# Highly recommended by upstream when building from source
BuildRequires: %{python_module astropy}
@ -59,14 +56,14 @@ data, using a variety of statistics and optimization methods.
%prep
%setup -q -n sherpa-%{version} -a1
%autopatch -p1
# uncomment system libs https://sherpa.readthedocs.io/en/latest/install.html#fftw
sed -i "s|#fftw=local|fftw=local|" setup.cfg
sed -i "s|#fftw-include[-_]dirs.*$|fftw-include-dirs=%{_includedir}|" setup.cfg
sed -i "s|#fftw-lib-dirs.*$|fftw-lib-dirs=%{_libdir}|" setup.cfg
sed -i "s|#fftw-libraries|fftw-libraries|" setup.cfg
sed -i "s|/lib/|/%{_lib}/|" helpers/sherpa_config.py
rm -r extern/fftw-*
# adjust the "install path" for stk.so and group.so for the build phase
sed -i "/pydir =/ s/libdir,/self.install_dir, '%{_lib}',/" helpers/sherpa_config.py
%build
cp -r extern extern0
@ -97,7 +94,7 @@ sed -i "1{/\\/usr\\/bin\\/env python/d}" %{buildroot}%{$python_sitearch}/sherpa/
%check
# avoid conftest import mismatch
mv sherpa sherpa_temp
export PYTHONPATH=$PWD/sherpa-test-data-%{test_data_commit}
export PYTHONPATH=$PWD/sherpa-test-data-%{version}
# unclosed resource warnings by pytest although the tests use Path.to_text which should have closed it.
donttest="test_save"
# precision issues

26
reproducible.patch
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@ -1,26 +0,0 @@
Index: sherpa-4.12.0/extern/fftw-3.3.9/configure
===================================================================
--- sherpa-4.12.0.orig/extern/fftw-3.3.9/configure
+++ sherpa-4.12.0/extern/fftw-3.3.9/configure
@@ -14506,7 +14506,7 @@ main ()
}
_ACEOF
if ac_fn_c_try_compile "$LINENO"; then :
- ax_cv_c_flags__mtune_native=yes
+ ax_cv_c_flags__mtune_native=no
else
ax_cv_c_flags__mtune_native=no
fi
Index: sherpa-4.12.0/extern/fftw-3.3.9/m4/ax_cc_maxopt.m4
===================================================================
--- sherpa-4.12.0.orig/extern/fftw-3.3.9/m4/ax_cc_maxopt.m4
+++ sherpa-4.12.0/extern/fftw-3.3.9/m4/ax_cc_maxopt.m4
@@ -73,7 +73,7 @@ if test "$ac_test_CFLAGS" != "set"; then
CFLAGS="-O3 -fomit-frame-pointer"
# tune for the host by default
- AX_CHECK_COMPILER_FLAGS(-mtune=native, CFLAGS="$CFLAGS -mtune=native")
+ #AX_CHECK_COMPILER_FLAGS(-mtune=native, CFLAGS="$CFLAGS -mtune=native")
# -malign-double for x86 systems
AX_CHECK_COMPILER_FLAGS(-malign-double, CFLAGS="$CFLAGS -malign-double")

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sherpa-4.14.1.tar.gz
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@ -1,3 +0,0 @@
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size 13144910

3
sherpa-4.15.0.tar.gz Normal file
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oid sha256:5625b96734ae9fff2dee4988fb043ffbf86a8424be4b8d6a8b9d2e87829e44e9
size 13267153

3
sherpa-test-data-4.15.0.tar.gz Normal file
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oid sha256:1ae5ebe22a4ec152dbd6b59c7e2cf825756f7d55601d14e2b9ec3a1ff2140e9d
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size 134767384