Dirk Mueller
f06ed7f1b8
- Update to 4.15.0
* This release of Sherpa includes various enhancements,
documentation updates, bug fixes, and infrastructure changes.
## Enhancements:
* Improved validation of arguments when creating Data objects:
- arrays sent to Data objects are now converted to ndarrays
- the independent axis is now made read-only
- the size of a data object is now fixed.
* Filter setting with notice/ignore are reported to the screen
for the users of the UI layer.
* Increased test coverage for plotting
## Documentation changes:
* updated readthedocs to use pip and pytest instead of setup.py
* several updates to documentation, including updates to
fake_pha, calc_ftest, calc_mlr
## Infrastructure changes:
* Drop support for Python 3.7
* Updates to start creating Python 3.10 Conda packages.
* Use Numpy 1.20 for Python 3.8/3.9 and Numpy 1.21 for Python
3.10.
* Moves toward PEP-517 with some distutils cleanup and more
configuration moved from setup.py to setup.cfg
* Various improvements to the GitHub Actions and GitLab workflows
## Bug fixes:
* Ensure chi2xspecvar errors match XSPEC when 0 counts are
present during background subtraction
* Remove model instances from the global symbol table when clean
is called
* Addresses new warnings in the tests for Matplotlib 3.6.0 and
AstroPy 5.1
OBS-URL: https://build.opensuse.org/request/show/1059941
OBS-URL: https://build.opensuse.org/package/show/devel:languages:python:numeric/python-sherpa?expand=0&rev=27
126 lines
4.6 KiB
RPMSpec
126 lines
4.6 KiB
RPMSpec
#
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# spec file for package python-sherpa
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#
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# Copyright (c) 2023 SUSE LLC
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#
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# All modifications and additions to the file contributed by third parties
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# remain the property of their copyright owners, unless otherwise agreed
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# upon. The license for this file, and modifications and additions to the
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# file, is the same license as for the pristine package itself (unless the
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# license for the pristine package is not an Open Source License, in which
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# case the license is the MIT License). An "Open Source License" is a
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# license that conforms to the Open Source Definition (Version 1.9)
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# published by the Open Source Initiative.
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# Please submit bugfixes or comments via https://bugs.opensuse.org/
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#
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# python311 does not bundle setuptools < 60
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%define skip_python311 1
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Name: python-sherpa
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Version: 4.15.0
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Release: 0
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Summary: Modeling and fitting package for scientific data analysis
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License: GPL-3.0-only
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URL: https://github.com/sherpa/sherpa/
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Source0: https://github.com/sherpa/sherpa/archive/%{version}.tar.gz#/sherpa-%{version}.tar.gz
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Source1: https://github.com/sherpa/sherpa-test-data/archive/refs/tags/%{version}.tar.gz#/sherpa-test-data-%{version}.tar.gz
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BuildRequires: %{python_module devel >= 3.8}
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BuildRequires: %{python_module numpy-devel >= 1.19}
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BuildRequires: %{python_module pip}
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BuildRequires: %{python_module wheel}
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BuildRequires: bison
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BuildRequires: fdupes
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BuildRequires: fftw3-devel
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BuildRequires: flex
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BuildRequires: gcc-c++
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BuildRequires: python-rpm-macros
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Requires: python-numpy >= 1.19
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Requires(post): update-alternatives
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Requires(postun):update-alternatives
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ExcludeArch: %{ix86} %{arm}
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# SECTION test requirements
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BuildRequires: %{python_module pytest >= 5}
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BuildRequires: %{python_module pytest-xvfb}
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# Highly recommended by upstream when building from source
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BuildRequires: %{python_module astropy}
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BuildRequires: %{python_module matplotlib}
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# /SECTION
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%python_subpackages
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%description
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Sherpa is the CIAO modeling and fitting application. It enables the
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user to construct models from definitions and fit those models to
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data, using a variety of statistics and optimization methods.
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%prep
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%setup -q -n sherpa-%{version} -a1
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# uncomment system libs https://sherpa.readthedocs.io/en/latest/install.html#fftw
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sed -i "s|#fftw=local|fftw=local|" setup.cfg
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sed -i "s|#fftw-include[-_]dirs.*$|fftw-include-dirs=%{_includedir}|" setup.cfg
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sed -i "s|#fftw-lib-dirs.*$|fftw-lib-dirs=%{_libdir}|" setup.cfg
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sed -i "s|#fftw-libraries|fftw-libraries|" setup.cfg
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rm -r extern/fftw-*
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# adjust the "install path" for stk.so and group.so for the build phase
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sed -i "/pydir =/ s/libdir,/self.install_dir, '%{_lib}',/" helpers/sherpa_config.py
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%build
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cp -r extern extern0
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%{python_expand #
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# use the python3X bundled setuptools instead of setuptools 60+ from the distribution
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# https://sherpa.readthedocs.io/en/latest/install.html#building-from-source
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mkdir -p build
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$python -m venv build/buildenv --system-site-packages
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build/buildenv/bin/pip wheel --no-deps --disable-pip-version-check --use-pep517 --no-build-isolation --progress-bar off --verbose . -w build/
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rm -r extern
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cp -r extern0 extern
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}
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%install
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%pyproject_install
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%python_clone -a %{buildroot}%{_bindir}/sherpa_test
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%python_clone -a %{buildroot}%{_bindir}/sherpa_smoke
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%python_expand %fdupes %{buildroot}%{$python_sitearch}
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%{python_expand # REMOVE HASHBANGS FROM NON-EXEC FILES
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sed -i "1{/\\/usr\\/bin\\/env python/d}" %{buildroot}%{$python_sitearch}/sherpa/optmethods/ncoresde.py
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sed -i "1{/\\/usr\\/bin\\/env python/d}" %{buildroot}%{$python_sitearch}/sherpa/optmethods/ncoresnm.py
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sed -i "1{/\\/usr\\/bin\\/env python/d}" %{buildroot}%{$python_sitearch}/sherpa/optmethods/opt.py
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sed -i "1{/\\/usr\\/bin\\/env python/d}" %{buildroot}%{$python_sitearch}/sherpa/utils/akima.py
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}
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%check
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# avoid conftest import mismatch
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mv sherpa sherpa_temp
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export PYTHONPATH=$PWD/sherpa-test-data-%{version}
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# unclosed resource warnings by pytest although the tests use Path.to_text which should have closed it.
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donttest="test_save"
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# precision issues
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%ifnarch x86_64
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donttest+=" or (test_regproj and sherpa.plot.dummy_backend)"
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donttest+=" or (test_fit_single and Chi2XspecVar)"
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%endif
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%pytest_arch --pyargs sherpa -k "not ($donttest)"
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%post
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%python_install_alternative sherpa_smoke
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%python_install_alternative sherpa_test
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%postun
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%python_uninstall_alternative sherpa_smoke
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%python_uninstall_alternative sherpa_test
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%files %{python_files}
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%doc README.md
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%license LICENSE
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%python_alternative %{_bindir}/sherpa_test
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%python_alternative %{_bindir}/sherpa_smoke
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%{python_sitearch}/sherpa
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%{python_sitearch}/sherpa-%{version}*-info
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%{python_sitearch}/stk.so
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%{python_sitearch}/group.so
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%changelog
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