Accepting request 832184 from home:badshah400:branches:Application:Geo

- Update to version 5.1.1.
- Drop insighttoolkit-drop-netlib-triangle-files.patch:
  incorporated upstream.
- Disable builds for aarch64: Known Eigen+CastXML issue
  [https://gitlab.com/libeigen/eigen/-/issues/1979].

OBS-URL: https://build.opensuse.org/request/show/832184
OBS-URL: https://build.opensuse.org/package/show/Application:Geo/insighttoolkit?expand=0&rev=31

InsightToolkit-5.1.0.tar.gz

@@ -1,3 +0,0 @@
-version https://git-lfs.github.com/spec/v1
-oid sha256:121020a1611508cec8123eb5226215598cec07be627d843a2e6b6da891e61d13
-size 20694338

insighttoolkit-5.1.1.tar.gz

@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:185d4f3410585a8b833c708df7676820cf4e52044ff310aa00955f4d0e08c865
+size 20799343

insighttoolkit.changes

@@ -1,3 +1,65 @@
+-------------------------------------------------------------------
+Thu Aug 20 17:49:29 UTC 2020 - Atri Bhattacharya <badshah400@gmail.com>
+
+- Update to version 5.1.1:
+  * VtkGlue module-Provide support for VTK new cmake targets.
+  * Add VXL support for GCC 9.
+  * Use double-conversion's CMake targets.
+  * Fix for non-system double-conversion build.
+  * Patch missing const qualifier to GDCM dircos_comp comparison.
+  * Back-port gh#InsightSoftwareConsortium/ITK#1165 to support
+    Visual Studio 2019.
+  * Address bug with small size in output of SliceImageFilter.
+  * Update GDCM to latest on the release-2.8 branch.
+  * Don't use InsertElement which modifies MTime.
+  * Address buffer overflow with deprecated GDCM1 interface.
+  * update download location for pre-built ICU for Visual Studio.
+  * Duplicate ImageToImageFilter wrapping of ULL.
+  * Double scaling introduced in refactoring.
+  * Add missing const qualifier.
+  * Add StatisticsImageFilter::SetNumberOfStreamDivisions Python.
+  * Make column limit more stringent in the examples.
+  * CUFFTW paths were not being set and unnecessary FFTW files
+    used.
+  * Disable dynamic threading in noise filter.
+  * Added vcl compiler detection for GCC 10.x.
+  * Specify itk package in SWIG Python modules.
+  * Fix warning in PointSetToPointSetMetricv4
+    (gh#InsightSoftwareConsortium/ITK#1820).
+  * Fix segfault with empty CompositeTransforms.
+  * Fix additional segmentation faults with empty Composite.
+  * Address missing brace initializer warning.
+  * Address memory leak in CastSpatialOpbjectTest.
+  * Simplify itk.BlockMatchingImageFilter feature points PointSet
+    mangling.
+  * ITK_WRAP_PYTHON_PROCCESS to ITK_WRAP_PYTHON_PROCESS.
+  * Accept TemplateTypeError with fallback_only.
+  * Import C module from Python submodule.
+  * Fix Segfault in Delaunay Filter.
+  * ITKModuleExternal CMAKE_LIBRARY_OUTPUT_DIRECTORY when
+    wrapping.
+  * Avoid duplicate itk.PointSetD3 wrapping.
+  * Wrap ExtractImageFilter for UL.
+  * Use Numpy bridge with array of dimension 1.
+  * Restore LICENSE accidentally overwritten by a merge commit.
+  * Rename libPNG's license to match the original one.
+  * Support casting unsigned long pixel types in Python.
+  * Empty image support in image_from_xarray.
+  * Remove netnlib triangle classes.
+  * Remove License incompatible netlib files from vxl updates.
+  * improve helpers of itk.Filters.
+  * Do not reference FE_DIVBYZERO FE_INVALID with Emscripten.
+  * Add missing enumerate with multi-ndarray-output itk filters.
+  * Do not wrap unsigned char for connected component output.
+  * Fix issue gh#InsightSoftwareConsortium/ITK#1950,
+    ImageMaskSpatialObject access outside image buffer.
+  * Register Dask serialization functions for NDArrayITKBase.
+  * Add testing data content links for ITK 5.1.1.
+- Drop insighttoolkit-drop-netlib-triangle-files.patch:
+  incorporated upstream.
+- Disable builds for aarch64: Known Eigen+CastXML issue
+  [https://gitlab.com/libeigen/eigen/-/issues/1979].
+
 -------------------------------------------------------------------
 Thu Aug 20 08:52:30 UTC 2020 - Martin Liška <mliska@suse.cz>
 

insighttoolkit.spec

@@ -18,25 +18,21 @@
 
 
 %global __builder ninja
-%define tarname InsightToolkit
+%define tarname ITK
 %define baseversion 5.1
 %define libname lib%{name}5
 
 Name:           insighttoolkit
-Version:        5.1.0
+Version:        5.1.1
 Release:        0
 Summary:        Toolkit for scientific image processing, segmentation, and registration
-# NON-FREE FILES IN Modules/ThirdParty/VNL/src/vxl/v3p/netlib/ NOT USED BY ITK AND REMOVED BY Patch4
-# SEE NOTICE file, https://github.com/InsightSoftwareConsortium/ITK/pull/1913, and https://github.com/InsightSoftwareConsortium/ITK/pull/1920
 License:        Apache-2.0
 URL:            https://www.itk.org
-Source:         https://github.com/InsightSoftwareConsortium/ITK/releases/download/v%{version}/%{tarname}-%{version}.tar.gz
+Source:         https://github.com/InsightSoftwareConsortium/ITK/archive/v%{version}.tar.gz#/%{name}-%{version}.tar.gz
 # PATCH-FIX-UPSTREAM proper linking against math library [gh#InsightSoftwareConsortium/ITK#1867, gh#InsightSoftwareConsortium/ITK#1878]
 Patch1:         nrrdio-linking.patch
 # PATCH-FIX-UPSTREAM proper linking against math library [gh#InsightSoftwareConsortium/ITK#1867, gh#InsightSoftwareConsortium/ITK#1878]
 Patch3:         itklbfgs-linking.patch
-# PATCH-FIX-UPSTREAM insighttoolkit-drop-netlib-triangle-files.patch [gh#InsightSoftwareConsortium/ITK#1913] badshah400@gmail.com -- Drop netlib triangle files and any linking to them due to licensing issues; patch from upstream
-Patch4:         insighttoolkit-drop-netlib-triangle-files.patch
 # PATCH-FIX-OPENSUSE reproducible.patch boo#1100677 gh#InsightSoftwareConsortium/ITK#1939
 Patch100:       reproducible.patch
 BuildRequires:  CastXML-devel
@@ -67,6 +63,8 @@ BuildRequires:  pkgconfig(libpng)
 BuildRequires:  pkgconfig(libtiff-4)
 BuildRequires:  pkgconfig(libxml-2.0)
 BuildRequires:  pkgconfig(zlib)
+# Builds currently fail on aarch64 due to known eigen+CastXML issues: https://gitlab.com/libeigen/eigen/-/issues/1979
+ExcludeArch:    aarch64
 
 %description
 The Insight Toolkit (ITK) is a toolkit for N-dimensional scientific
@@ -119,8 +117,7 @@ This package provides the modules for ITK's python bindings.
 %autosetup -p1 -n %{tarname}-%{version}
 
 %build
-
+# Tests disabled because no KWStyle pkg for openSUSE
-# Enabling BUILD_TESTING requires KWStyle, not available for openSUSE
 %cmake \
   -DITK_INSTALL_LIBRARY_DIR:PATH=%{_lib}/ \
   -DITK_INSTALL_INCLUDE_DIR:PATH=include/%{name}/ \