Accepting request 351328 from home:tzotsos

Main dependency of OTB

OBS-URL: https://build.opensuse.org/request/show/351328
OBS-URL: https://build.opensuse.org/package/show/Application:Geo/insighttoolkit?expand=0&rev=1

.gitattributes

@@ -0,0 +1,23 @@
+## Default LFS
+*.7z filter=lfs diff=lfs merge=lfs -text
+*.bsp filter=lfs diff=lfs merge=lfs -text
+*.bz2 filter=lfs diff=lfs merge=lfs -text
+*.gem filter=lfs diff=lfs merge=lfs -text
+*.gz filter=lfs diff=lfs merge=lfs -text
+*.jar filter=lfs diff=lfs merge=lfs -text
+*.lz filter=lfs diff=lfs merge=lfs -text
+*.lzma filter=lfs diff=lfs merge=lfs -text
+*.obscpio filter=lfs diff=lfs merge=lfs -text
+*.oxt filter=lfs diff=lfs merge=lfs -text
+*.pdf filter=lfs diff=lfs merge=lfs -text
+*.png filter=lfs diff=lfs merge=lfs -text
+*.rpm filter=lfs diff=lfs merge=lfs -text
+*.tbz filter=lfs diff=lfs merge=lfs -text
+*.tbz2 filter=lfs diff=lfs merge=lfs -text
+*.tgz filter=lfs diff=lfs merge=lfs -text
+*.ttf filter=lfs diff=lfs merge=lfs -text
+*.txz filter=lfs diff=lfs merge=lfs -text
+*.whl filter=lfs diff=lfs merge=lfs -text
+*.xz filter=lfs diff=lfs merge=lfs -text
+*.zip filter=lfs diff=lfs merge=lfs -text
+*.zst filter=lfs diff=lfs merge=lfs -text

.gitignore

@@ -0,0 +1 @@
+.osc

InsightToolkit-4.8.2.tar.gz

@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:d8d5e3aea700588c60b01418c440b2d95b517ea18dd4c834c5164354e53596af
+size 17400381

doubleconv.patch

@@ -0,0 +1,16 @@
+Description: Upstream provides an option to build against
+ a system installed double conversion but it appears as
+ broken at least on Debian
+Author: Mathieu Malaterre <malat@debian.org>
+Bug-Debian: http://bugs.debian.org/733629
+
+--- insighttoolkit4-4.5.0.orig/Modules/Core/Common/src/CMakeLists.txt
++++ insighttoolkit4-4.5.0/Modules/Core/Common/src/CMakeLists.txt
+@@ -108,6 +108,7 @@ endif()
+ ### generating libraries
+ add_library( ITKCommon ${ITK_LIBRARY_BUILD_TYPE} ${ITKCommon_SRCS})
+ 
++include_directories( /usr/include/double-conversion )
+ target_link_libraries(ITKCommon
+   itksys
+   ITKVNLInstantiation

insighttoolkit.changes

@@ -0,0 +1,24 @@
+----------------------------------------------------------------------------
+* Sat Dec 26 15:34:00 UTC 2015 Angelos Tzotsos <tzotsos@opensuse.org> - 4.8.2
+
+- Update to 4.8.2
+
+----------------------------------------------------------------------------
+* Fri Aug 14 00:40:00 UTC 2015 Angelos Tzotsos <tzotsos@opensuse.org> - 4.7.2
+
+- Update to 4.7.2
+
+----------------------------------------------------------------------------
+* Fri Feb 27 21:24:00 UTC 2015 Angelos Tzotsos <tzotsos@opensuse.org>
+
+- Renamed package to insighttoolkit
+
+----------------------------------------------------------------------------
+* Wed Jan 14 01:14:00 UTC 2015 Angelos Tzotsos <tzotsos@opensuse.org> - 4.6.0
+
+- Update to 4.6.0
+
+----------------------------------------------------------------------------
+* Sat Mar 01 23:03:00 UTC 2014 Angelos Tzotsos <tzotsos@opensuse.org> - 4.5.1
+
+- Initial build

insighttoolkit.spec

@@ -0,0 +1,175 @@
+#
+# spec file for package insighttoolkit
+#
+# Copyright (c) 2015 Angelos Tzotsos <tzotsos@opensuse.org>.
+#
+# All modifications and additions to the file contributed by third parties
+# remain the property of their copyright owners, unless otherwise agreed
+# upon. The license for this file, and modifications and additions to the
+# file, is the same license as for the pristine package itself (unless the
+# license for the pristine package is not an Open Source License, in which
+# case the license is the MIT License). An "Open Source License" is a
+# license that conforms to the Open Source Definition (Version 1.9)
+# published by the Open Source Initiative.
+
+# Please submit bugfixes or comments via http://bugs.opensuse.org/
+
+# norootforbuild
+
+%define tarname InsightToolkit
+
+Name:           insighttoolkit
+Version:        4.8.2
+Release:        1
+Summary:        Insight Segmentation and Registration Toolkit
+Group:          Development/Libraries
+License:        Apache-2
+URL:            http://www.itk.org
+Source0:        %{tarname}-%{version}.tar.gz
+Patch0:         nrrdio-linking.patch
+Patch1:         doubleconv.patch
+BuildRoot:      %{_tmppath}/%{name}-%{version}-build
+
+BuildRequires:	cmake >= 2.8.0
+BuildRequires:  gcc-c++ 
+BuildRequires:  gcc
+BuildRequires:  swig
+BuildRequires:  zlib-devel
+BuildRequires:  libpng-devel
+BuildRequires:  libtiff-devel
+BuildRequires:  fftw3-devel
+BuildRequires:  fftw3-threads-devel
+BuildRequires:  dcmtk-devel
+# BuildRequires:  gdcm-devel
+BuildRequires:  hdf5-devel
+BuildRequires:  python-devel
+BuildRequires:  vtk-devel
+BuildRequires:  python-vtk
+BuildRequires:  libjpeg-devel
+BuildRequires:  libexpat-devel
+BuildRequires:  sed
+BuildRequires:  fdupes
+
+
+%description
+ITK is an open-source, cross-platform system that provides developers with an extensive suite of software tools for image analysis
+
+%package devel
+Summary:        Development files for ITK
+Group:          Development/Libraries
+Requires:       lib%{name}4 = %{version}
+Requires:       zlib-devel
+Requires:       libpng-devel
+Requires:       libtiff-devel
+Requires:       fftw3-devel
+Requires:       fftw3-threads-devel
+Requires:       dcmtk-devel
+Requires:       hdf5-devel
+Requires:       vtk-devel
+Requires:       libjpeg-devel
+Requires:       libexpat-devel
+Provides:       lib%{name}-devel
+
+%description devel
+Development files for the ITK library. ITK is an open-source, cross-platform system that provides developers with an extensive suite of software tools for image analysis
+
+%package -n lib%{name}4
+Summary:        ITK static libraries
+Group:          System/Libraries
+
+%description -n lib%{name}4
+Shared ITK library. ITK is an open-source, cross-platform system that provides developers with an extensive suite of software tools for image analysis.
+
+%prep
+%setup -q -n %{tarname}-%{version}
+%patch0 -p1
+%patch1 -p1
+
+%build
+cd ..
+mkdir temp
+cd temp
+cmake  -DBUILD_EXAMPLES:BOOL=ON \
+       -DBUILD_SHARED_LIBS:BOOL=ON \
+       -DBUILD_TESTING:BOOL=OFF \
+       -DCMAKE_VERBOSE_MAKEFILE:BOOL=ON \
+       -DCMAKE_EXPORT_COMPILE_COMMANDS:BOOL=ON \
+       -DCMAKE_SKIP_RPATH:BOOL=ON \
+       -DUSE_FFTWF=ON \
+       -DITK_USE_FFTWD:BOOL=ON \
+       -DITK_USE_FFTWF:BOOL=ON \
+       -DITK_USE_SYSTEM_FFTW:BOOL=ON \
+       -DITK_USE_STRICT_CONCEPT_CHECKING:BOOL=ON \
+       -DITK_USE_SYSTEM_DOUBLECONVERSION:BOOL=OFF \
+       -DITK_USE_SYSTEM_DCMTK:BOOL=ON \
+       -DITK_USE_SYSTEM_GDCM:BOOL=OFF \
+       -DITK_USE_SYSTEM_HDF5:BOOL=ON \
+       -DITK_USE_SYSTEM_JPEG:BOOL=ON \
+       -DITK_USE_SYSTEM_PNG:BOOL=ON \
+       -DITK_USE_SYSTEM_TIFF:BOOL=ON \
+       -DITK_USE_SYSTEM_VXL:BOOL=OFF \
+       -DITK_USE_SYSTEM_ZLIB:BOOL=ON \
+       -DITK_USE_SYSTEM_GCCXML:BOOL=OFF \
+       -DITK_USE_SYSTEM_SWIG:BOOL=ON \
+       -DITK_USE_SYSTEM_EXPAT:BOOL=ON \
+       -DModule_ITKDCMTK:BOOL=ON \
+       -DModule_ITKIOPhilipsREC:BOOL=OFF \
+       -DModule_ITKLevelSetsv4Visualization:BOOL=OFF \
+       -DModule_ITKReview:BOOL=OFF \
+       -DModule_ITKVideoBridgeOpenCV:BOOL=OFF \
+       -DModule_ITKVideoBridgeVXL:BOOL=OFF \
+       -DModule_ITKVtkGlue:BOOL=OFF \
+       -DModule_ITKDeprecated:BOOL=OFF \
+       -DITKV3_COMPATIBILITY:BOOL=ON \
+       -DVCL_INCLUDE_CXX_0X:BOOL=ON \
+       -DITK_WRAP_DIMS="2;3;4" \
+       -DITK_WRAP_double:BOOL=ON \
+       -DITK_WRAP_vector_double:BOOL=ON \
+       -DITK_WRAP_covariant_vector_double:BOOL=ON \
+       -DITK_WRAP_complex_double:BOOL=ON \
+       -DITK_WRAPPING:BOOL=OFF \
+       -DITK_WRAP_PYTHON:BOOL=OFF \
+       -DCMAKE_INSTALL_PREFIX:PATH=/usr \
+       -DCMAKE_BUILD_TYPE:STRING="Release" ../%{tarname}-%{version}/
+
+make VERBOSE=1 %{?_smp_mflags}
+
+
+%install
+cd ../temp
+make install DESTDIR=%{buildroot}
+
+%if "%{_lib}" == "lib64"
+mkdir -p %{buildroot}/usr/lib64
+mv %{buildroot}/usr/lib/* %{buildroot}/usr/lib64/
+sed -i 's|/lib/|/lib64/|g' %{buildroot}/usr/lib64/cmake/ITK-4.8/ITKConfig.cmake
+sed -i 's|/lib/|/lib64/|g' %{buildroot}/usr/lib64/cmake/ITK-4.8/ITKTargets.cmake
+sed -i 's|/lib/|/lib64/|g' %{buildroot}/usr/lib64/cmake/ITK-4.8/ITKTargets-release.cmake
+%endif
+rm -rf %{buildroot}/usr/lib/debug
+
+%fdupes %{buildroot}
+
+
+%clean
+rm -rf %{buildroot}
+
+%post -n lib%{name}4 -p /sbin/ldconfig
+
+%postun -n lib%{name}4 -p /sbin/ldconfig
+
+%files -n lib%{name}4
+%defattr(644,root,root,755)
+# %dir %{_libdir}/
+%{_libdir}/*.so.1
+
+
+%files devel
+%defattr(-,root,root,-)
+%{_includedir}/*
+%{_libdir}/lib*.so
+%{_libdir}/cmake/
+%{_bindir}/itkTestDriver
+%{_datadir}/*
+
+%changelog

nrrdio-linking.patch

@@ -0,0 +1,15 @@
+Description: Link libITKNrrdIO with -lm (needed for sqrt)
+Author: Steve Robbins <smr@debian.org>
+Forwarded: no
+
+--- insighttoolkit4-4.5.0.orig/Modules/ThirdParty/NrrdIO/src/NrrdIO/CMakeLists.txt
++++ insighttoolkit4-4.5.0/Modules/ThirdParty/NrrdIO/src/NrrdIO/CMakeLists.txt
+@@ -64,7 +64,7 @@
+ ADD_DEFINITIONS(-DTEEM_ZLIB=1)
+ 
+ ADD_LIBRARY(ITKNrrdIO ${nrrdio_SRCS} )
+-TARGET_LINK_LIBRARIES(ITKNrrdIO ${ITKZLIB_LIBRARIES})
++TARGET_LINK_LIBRARIES(ITKNrrdIO ${ITKZLIB_LIBRARIES} -lm)
+ 
+ IF(ITK_LIBRARY_PROPERTIES)
+   SET_TARGET_PROPERTIES(ITKNrrdIO PROPERTIES ${ITK_LIBRARY_PROPERTIES})