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Accepting request 1001218 from science:HPC

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OBS-URL: https://build.opensuse.org/request/show/1001218
OBS-URL: https://build.opensuse.org/package/show/openSUSE:Factory/openmpi4?expand=0&rev=7
This commit is contained in:
Dominique Leuenberger 2022-09-06 11:00:49 +00:00 committed by Git OBS Bridge
commit 4060e22973
5 changed files with 146 additions and 16 deletions
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5
_service
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@ -7,11 +7,10 @@
<param name="filename">openmpi</param>
<param name="versionformat">@PARENT_TAG@.@TAG_OFFSET@.%h</param>
<param name="versionrewrite-pattern">v(.*)</param>
<param name="versionrewrite-replacement">\1</param>
<param name="revision">a8dd8708d8b6d1346328d7f4612d63b307c25653</param>
<param name="revision">v4.1.4</param>
</service>
<service name="recompress" mode="disabled">
<param name="file">openmpi*.tar</param>
<param name="compression">bz2</param>
<param name="compression">zst</param>
</service>
</services>

3
openmpi-4.1.1.0.a8dd8708d8b6.tar.bz2
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@ -1,3 +0,0 @@
version https://git-lfs.github.com/spec/v1
oid sha256:52fb519d3b71c62223f33b1434d245b724b4c3b59c9824b983df26cebaf4413b
size 6461180

3
openmpi-4.1.4.0.ffb0adcdd6.tar.zst Normal file
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@ -0,0 +1,3 @@
version https://git-lfs.github.com/spec/v1
oid sha256:e65d803fcc2831496069b411db47b6d95fd8accfba2ad69768973592cb4efe58
size 6500275

131
openmpi4.changes
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@ -1,3 +1,134 @@
-------------------------------------------------------------------
Wed Aug 3 08:18:34 UTC 2022 - Dirk Müller <dmueller@suse.com>
- update to 4.1.4:
* Fix possible length integer overflow in numerous non-blocking collective
operations.
* Fix segmentation fault in UCX if MPI Tool interface is finalized before
MPI_Init is called.
* Remove /usr/bin/python dependency in configure.
* Fix OMPIO issue with long double etypes.
* Update treematch topology component to fix numerous correctness issues.
* Fix memory leak in UCX MCA parameter registration.
* Fix long operation closing file descriptors on non-Linux systems that
can appear as a hang to users.
* Fix for attribute handling on GCC 11 due to pointer aliasing.
* Fix multithreaded race in UCX PML's datatype handling.
* Fix a correctness issue in CUDA Reduce algorithm.
* Fix compilation issue with CUDA GPUDirect RDMA support.
* Fix to make shmem_calloc(..., 0) conform to the OpenSHMEM specification.
* Add UCC collectives component.
* Fix divide by zero issue in OMPI IO component.
* Fix compile issue with libnl when not in standard search locations.
* Fixed a seg fault in the smcuda BTL. Thanks to Moritz Kreutzer and
@Stadik for reporting the issue.
* Added support for ELEMENTAL to the MPI handle comparison functions
in the mpi_f08 module. Thanks to Salvatore Filippone for raising
the issue.
* Minor datatype performance improvements in the CUDA-based code paths.
* Fix MPI_ALLTOALLV when used with MPI_IN_PLACE.
* Fix MPI_BOTTOM handling for non-blocking collectives. Thanks to
Lisandro Dalcin for reporting the problem.
* Enable OPAL memory hooks by default for UCX.
* Many compiler warnings fixes, particularly for newer versions of
GCC.
* Fix intercommunicator overflow with large payload collectives. Also
fixed MPI_REDUCE_SCATTER_BLOCK for similar issues with large payload
collectives.
* Back-port ROMIO 3.3 fix to use stat64() instead of stat() on GPFS.
* Fixed several non-blocking MPI collectives to not round fractions
based on float precision.
* Fix compile failure for --enable-heterogeneous. Also updated the
README to clarify that --enable-heterogeneous is functional, but
still not recomended for most environments.
* Minor fixes to OMPIO, including:
- Fixing the open behavior of shared memory shared file pointers.
Thanks to Axel Huebl for reporting the issue
- Fixes to clean up lockfiles when closing files. Thanks to Eric
Chamberland for reporting the issue.
* Update LSF configure failure output to be more clear (e.g., on RHEL
platforms).
* Update if_[in|ex]clude behavior in btl_tcp and oob_tcp to select
*all* interfaces that fall within the specified subnet range.
* ROMIO portability fix for OpenBSD
* Fix handling of MPI_IN_PLACE with MPI_ALLTOALLW and improve performance
of MPI_ALLTOALL and MPI_ALLTOALLV for MPI_IN_PLACE.
* Fix one-sided issue with empty groups in Post-Start-Wait-Complete
synchronization mode.
* Fix Fortran status returns in certain use cases involving
Generalized Requests
* Romio datatype bug fixes.
* Fix oshmem_shmem_finalize() when main() returns non-zero value.
* Fix wrong affinity under LSF with the membind option.
* Fix count==0 cases in MPI_REDUCE and MPI_IREDUCE.
* Fix ssh launching on Bourne-flavored shells when the user has "set
-u" set in their shell startup files.
* Correctly process 0 slots with the mpirun --host option.
* Ensure to unlink and rebind socket when the Open MPI session
directory already exists.
* Fix a segv in mpirun --disable-dissable-map.
* Fix a potential hang in the memory hook handling.
* Slight performance improvement in MPI_WAITALL when running in
MPI_THREAD_MULTIPLE.
* Fix hcoll datatype mapping and rooted operation behavior.
* Correct some operations modifying MPI_Status.MPI_ERROR when it is
disallowed by the MPI standard.
* UCX updates:
- Fix datatype reference count issues.
- Detach dynamic window memory when freeing a window.
- Fix memory leak in datatype handling.
* Fix various atomic operations issues.
* mpirun: try to set the curses winsize to the pty of the spawned
task. Thanks to Stack Overflow user @Seriously for reporting the
issue.
* PMIx updates:
- Fix compatibility with external PMIx v4.x installations.
- Fix handling of PMIx v3.x compiler/linker flags. Thanks to Erik
Schnetter for reporting the issue.
- Skip SLURM-provided PMIx detection when appropriate. Thanks to
Alexander Grund for reporting the issue.
* Fix handling by C++ compilers when they #include the STL "<version>"
header file, which ends up including Open MPI's text VERSION file
(which is not C code). Thanks to @srpgilles for reporting the
issue.
* Fix MPI_Op support for MPI_LONG.
* Make the MPI C++ bindings library (libmpi_cxx) explicitly depend on
the OPAL internal library (libopen-pal). Thanks to Ye Luo for
reporting the issue.
* Fix configure handling of "--with-libevent=/usr".
* Fix memory leak when opening Lustre files. Thanks to Bert Wesarg
for submitting the fix.
* Fix MPI_SENDRECV_REPLACE to correctly process datatype errors.
Thanks to Lisandro Dalcin for reporting the issue.
* Fix MPI_SENDRECV_REPLACE to correctly handle large data. Thanks
Jakub Benda for reporting this issue and suggesting a fix.
* Add workaround for TCP "dropped connection" errors to drastically
reduce the possibility of this happening.
* OMPIO updates:
- Fix handling when AMODE is not set. Thanks to Rainer Keller for
reporting the issue and supplying the fix.
- Fix FBTL "posix" component linking issue. Thanks for Honggang Li
for reporting the issue.
- Fixed segv with MPI_FILE_GET_BYTE_OFFSET on 0-sized file view.
- Thanks to GitHub user @shanedsnyder for submitting the issue.
* OFI updates:
- Multi-plane / Multi-Nic nic selection cleanups
- Add support for exporting Open MPI memory monitors into
Libfabric.
- Ensure that Cisco usNIC devices are never selected by the OFI
MTL.
- Fix buffer overflow in OFI networking setup. Thanks to Alexander
Grund for reporting the issue and supplying the fix.
* Fix SSEND on tag matching networks.
* Fix error handling in several MPI collectives.
* Fix the ordering of MPI_COMM_SPLIT_TYPE. Thanks to Wolfgang
Bangerth for raising the issue.
* No longer install the orted-mpir library (it's an internal / Libtool
convenience library). Thanks to Andrew Hesford for the fix.
* PSM2 updates:
- Allow advanced users to disable PSM2 version checking.
- Fix to allow non-default installation locations of psm2.h.
-------------------------------------------------------------------
Wed Apr 28 11:08:54 UTC 2021 - Nicolas Morey-Chaisemartin <nmoreychaisemartin@suse.com>

20
openmpi4.spec
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@ -1,7 +1,7 @@
#
# spec file for package %{package_name}%{?testsuite:-testsuite}
# spec file
#
# Copyright (c) 2021 SUSE LLC
# Copyright (c) 2022 SUSE LLC
# Copyright (c) 2004-2005 The Trustees of Indiana University and Indiana
# University Research and Technology
# Corporation. All rights reserved.
@ -41,9 +41,9 @@
# To enable them, simply uncomment:
# % define build_static_devel 1
%define pname openmpi
%define vers 4.1.1
%define _vers 4_1_1
%global pname openmpi
%global vers 4.1.4
%define _vers 4_1_4
%define m_f_ver 4
%bcond_with ringdisabled
@ -119,7 +119,7 @@ ExclusiveArch: do_not_build
%global hpc_openmpi_pack_version %{hpc_openmpi_dep_version}
%endif
%define git_ver .0.a8dd8708d8b6
%define git_ver .0.ffb0adcdd6
#############################################################################
#
@ -133,8 +133,8 @@ Release: 0
Summary: An implementation of MPI/SHMEM (Version %{m_f_ver})
License: BSD-3-Clause
Group: Development/Libraries/Parallel
URL: http://www.open-mpi.org/
Source0: openmpi-%{version}%{git_ver}.tar.bz2
URL: https://www.open-mpi.org/
Source0: openmpi-%{version}%{git_ver}.tar.zst
Source2: openmpi4-rpmlintrc
Source3: macros.hpc-openmpi
Source4: mpivars.sh
@ -146,11 +146,11 @@ BuildRequires: autoconf
BuildRequires: automake
BuildRequires: fdupes
BuildRequires: flex
BuildRequires: hostname
BuildRequires: libibumad-devel
BuildRequires: libibverbs-devel
BuildRequires: libtool
# net-tools is required to run hostname
BuildRequires: net-tools
BuildRequires: zstd
%if 0%{?testsuite}
BuildArch: noarch
BuildRequires: %{package_name} = %{version}