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Accepting request 821523 from home:bnavigator:branches:devel:languages:python:numeric

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:test flavor is currently failing but undetected!

- actually detect unit test failures with sys.exit(astropy.tests())
- do not fail on DeprecationWarnings
- support updated system lib wcslib 7.3 with
  astropy-pr10433-wcslib73-tests.patch gh#astropy/astropy#10433
  astropy-pr10440-wcs-datfix.patch gh#astropy/astropy#10440
- clean up blank lines after pytest report and prevent possible
  failure of tests depending on test order
  astropy-pr10545-remove-newline-3d_cd_hdr.patch
  gh#astropy/astropy#10545

OBS-URL: https://build.opensuse.org/request/show/821523
OBS-URL: https://build.opensuse.org/package/show/devel:languages:python:numeric/python-astropy?expand=0&rev=32
This commit is contained in:
Tomáš Chvátal 2020-07-17 19:10:50 +00:00 committed by Git OBS Bridge
parent a2a197c8df
commit 82ad95d973
5 changed files with 225 additions and 1 deletions
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123
astropy-pr10433-wcslib73-tests.patch Normal file
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@ -0,0 +1,123 @@
From 89b9db3e1336fafcbd3a6ab851b7278e24c5d77d Mon Sep 17 00:00:00 2001
From: Mihai Cara <mihail.cara@gmail.com>
Date: Wed, 3 Jun 2020 01:39:28 -0400
Subject: [PATCH] deal with updated WCSLIB to v7.3 (partial pr#10433)
---
CHANGES.rst | 5 ++++-
astropy/wcs/setup_package.py | 2 +-
astropy/wcs/tests/test_wcs.py | 18 ++++++++++++++++--
astropy/wcs/tests/test_wcsprm.py | 17 +++++++++++++----
4 files changed, 34 insertions(+), 8 deletions(-)
diff --git a/astropy/wcs/setup_package.py b/astropy/wcs/setup_package.py
index c0fc32376..c7f0b09ab 100644
--- a/astropy/wcs/setup_package.py
+++ b/astropy/wcs/setup_package.py
@@ -15,7 +15,7 @@ import numpy
from astropy_helpers.distutils_helpers import get_distutils_build_option
WCSROOT = os.path.relpath(os.path.dirname(__file__))
-WCSVERSION = "7.2.0"
+WCSVERSION = "7.3.0"
def b(s):
diff --git a/astropy/wcs/tests/test_wcs.py b/astropy/wcs/tests/test_wcs.py
index 12ccc3e10..2738bc758 100644
--- a/astropy/wcs/tests/test_wcs.py
+++ b/astropy/wcs/tests/test_wcs.py
@@ -31,7 +31,7 @@ _WCSLIB_VER = LooseVersion(_wcs.__version__)
def _check_v71_dateref_warnings(w, nmax=None):
- if _WCSLIB_VER >= '7.1' and w:
+ if _WCSLIB_VER >= '7.1' and _WCSLIB_VER < '7.3' and w:
if nmax is None:
assert w
else:
@@ -375,12 +375,19 @@ def test_to_header_string():
"CRVAL2 = 0.0 / Coordinate value at reference point ",
"LATPOLE = 90.0 / [deg] Native latitude of celestial pole ",
)
- if _WCSLIB_VER >= '7.1':
+
+ if _WCSLIB_VER >= '7.3':
+ hdrstr += (
+ "MJDREF = 0.0 / [d] MJD of fiducial time ",
+ )
+
+ elif _WCSLIB_VER >= '7.1':
hdrstr += (
"DATEREF = '1858-11-17' / ISO-8601 fiducial time ",
"MJDREFI = 0.0 / [d] MJD of fiducial time, integer part ",
"MJDREFF = 0.0 / [d] MJD of fiducial time, fractional part "
)
+
hdrstr += ("END", )
header_string = ''.join(hdrstr)
@@ -397,6 +404,13 @@ def test_to_header_string():
def test_to_fits():
nrec = 11 if _WCSLIB_VER >= '7.1' else 8
+ if _WCSLIB_VER < '7.1':
+ nrec = 8
+ elif _WCSLIB_VER < '7.3':
+ nrec = 11
+ else:
+ nrec = 9
+
w = wcs.WCS()
header_string = w.to_header()
wfits = w.to_fits()
diff --git a/astropy/wcs/tests/test_wcsprm.py b/astropy/wcs/tests/test_wcsprm.py
index c25ba7961..8d8a123a7 100644
--- a/astropy/wcs/tests/test_wcsprm.py
+++ b/astropy/wcs/tests/test_wcsprm.py
@@ -435,7 +435,10 @@ def test_fix2():
del fix_ref['obsfix']
fix_ref['datfix'] = "Changed '31/12/99' to '1999-12-31'"
- if LooseVersion(version) >= '7.1':
+ if LooseVersion(version) >= '7.3':
+ fix_ref['datfix'] = "Set DATEREF to '1858-11-17' from MJDREF.\n" + fix_ref['datfix']
+
+ elif LooseVersion(version) >= '7.1':
fix_ref['datfix'] = "Set DATE-REF to '1858-11-17' from MJD-REF.\n" + fix_ref['datfix']
assert w.fix() == fix_ref
@@ -453,13 +456,17 @@ def test_fix3():
'datfix': "Invalid DATE-OBS format '31/12/F9'",
'spcfix': 'No change',
'unitfix': 'No change',
- 'celfix': 'No change'}
+ 'celfix': 'No change'
+ }
+
version = wcs._wcs.__version__
if LooseVersion(version) <= "5":
del fix_ref['obsfix']
fix_ref['datfix'] = "Invalid parameter value: invalid date '31/12/F9'"
- if LooseVersion(version) >= '7.1':
+ if LooseVersion(version) >= '7.3':
+ fix_ref['datfix'] = "Set DATEREF to '1858-11-17' from MJDREF.\n" + fix_ref['datfix']
+ elif LooseVersion(version) >= '7.1':
fix_ref['datfix'] = "Set DATE-REF to '1858-11-17' from MJD-REF.\n" + fix_ref['datfix']
assert w.fix() == fix_ref
@@ -1116,7 +1123,9 @@ def test_datebeg():
'unitfix': 'No change',
'celfix': 'No change'}
- if LooseVersion(wcs._wcs.__version__) >= '7.1':
+ if LooseVersion(wcs._wcs.__version__) >= '7.3':
+ fix_ref['datfix'] = "Set DATEREF to '1858-11-17' from MJDREF.\n" + fix_ref['datfix']
+ elif LooseVersion(wcs._wcs.__version__) >= '7.1':
fix_ref['datfix'] = "Set DATE-REF to '1858-11-17' from MJD-REF.\n" + fix_ref['datfix']
assert w.fix() == fix_ref
--
2.27.0

24
astropy-pr10440-wcs-datfix.patch Normal file
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@ -0,0 +1,24 @@
From 4ddb4e94c67a4d8712fc656bcd9882b8f7e2b2f4 Mon Sep 17 00:00:00 2001
From: Mihai Cara <mihail.cara@gmail.com>
Date: Wed, 3 Jun 2020 16:31:22 -0400
Subject: [PATCH] Do not issue datfix warning when MJDREF has default value
---
CHANGES.rst | 2 ++ (removed for rebase)
astropy/wcs/wcs.py | 3 +++
2 files changed, 5 insertions(+)
diff --git a/astropy/wcs/wcs.py b/astropy/wcs/wcs.py
index 7f5f79bbc95..aa3a4d77951 100644
--- a/astropy/wcs/wcs.py
+++ b/astropy/wcs/wcs.py
@@ -681,6 +681,9 @@ def fix(self, translate_units='', naxis=None):
fixes = self.wcs.fix(translate_units, naxis)
for key, val in fixes.items():
if val != "No change":
+ if (key == 'datfix' and '1858-11-17' in val and
+ not np.count_nonzero(self.wcs.mjdref)):
+ continue
warnings.warn(
("'{0}' made the change '{1}'.").
format(key, val),

54
astropy-pr10545-remove-newline-3d_cd_hdr.patch Normal file
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@ -0,0 +1,54 @@
From e87d4647f2b152b33ef4c22edc2daf16b1dbc1bc Mon Sep 17 00:00:00 2001
From: Mihai Cara <mihail.cara@gmail.com>
Date: Wed, 8 Jul 2020 13:14:01 -0400
Subject: [PATCH] Remove newline characters from header file 3d_cd.hdr
---
astropy/wcs/tests/data/3d_cd.hdr | 17 +----------------
astropy/wcs/tests/test_wcs.py | 9 ++++-----
2 files changed, 5 insertions(+), 21 deletions(-)
diff --git a/astropy/wcs/tests/data/3d_cd.hdr b/astropy/wcs/tests/data/3d_cd.hdr
index be4ce2f1f88..8791e9d35e8 100644
--- a/astropy/wcs/tests/data/3d_cd.hdr
+++ b/astropy/wcs/tests/data/3d_cd.hdr
@@ -1,16 +1 @@
-CD1_2 = -3.72E-05
-CD1_3 = 0
-CD1_1 = -4.12E-05
-CUNIT3 = 'nm '
-CUNIT2 = 'deg '
-CTYPE1 = 'RA---TAN'
-NAXIS = 3
-CTYPE3 = 'AWAV '
-CD2_1 = -3.72E-05
-CTYPE2 = 'DEC--TAN'
-CD2_3 = 0
-CD2_2 = 4.12E-05
-CUNIT1 = 'deg '
-CD3_1 = 0
-CD3_2 = 0
-CD3_3 = 0.2
\ No newline at end of file
+CD1_2 = -3.72E-05 CD1_3 = 0 CD1_1 = -4.12E-05 CUNIT3 = 'nm ' CUNIT2 = 'deg ' CTYPE1 = 'RA---TAN' NAXIS = 3 CTYPE3 = 'AWAV ' CD2_1 = -3.72E-05 CTYPE2 = 'DEC--TAN' CD2_3 = 0 CD2_2 = 4.12E-05 CUNIT1 = 'deg ' CD3_1 = 0 CD3_2 = 0 CD3_3 = 0.2
\ No newline at end of file
diff --git a/astropy/wcs/tests/test_wcs.py b/astropy/wcs/tests/test_wcs.py
index 509d3e916a3..cd180952458 100644
--- a/astropy/wcs/tests/test_wcs.py
+++ b/astropy/wcs/tests/test_wcs.py
@@ -823,11 +823,10 @@ def test_printwcs(capsys):
captured = capsys.readouterr()
assert 'WCS Keywords' in captured.out
h = get_pkg_data_contents('data/3d_cd.hdr', encoding='binary')
- with pytest.warns(AstropyUserWarning):
- w = wcs.WCS(h)
- w.printwcs()
- captured = capsys.readouterr()
- assert 'WCS Keywords' in captured.out
+ w = wcs.WCS(h)
+ w.printwcs()
+ captured = capsys.readouterr()
+ assert 'WCS Keywords' in captured.out
def test_invalid_spherical():

13
python-astropy.changes
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@ -1,3 +1,16 @@
-------------------------------------------------------------------
Fri Jul 17 11:42:19 UTC 2020 - Benjamin Greiner <code@bnavigator.de>
- actually detect unit test failures with sys.exit(astropy.tests())
- do not fail on DeprecationWarnings
- support updated system lib wcslib 7.3 with
astropy-pr10433-wcslib73-tests.patch gh#astropy/astropy#10433
astropy-pr10440-wcs-datfix.patch gh#astropy/astropy#10440
- clean up blank lines after pytest report and prevent possible
failure of tests depending on test order
astropy-pr10545-remove-newline-3d_cd_hdr.patch
gh#astropy/astropy#10545
------------------------------------------------------------------- -------------------------------------------------------------------
Thu Jul 9 23:14:09 UTC 2020 - Benjamin Greiner <code@bnavigator.de> Thu Jul 9 23:14:09 UTC 2020 - Benjamin Greiner <code@bnavigator.de>

12
python-astropy.spec
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@ -34,6 +34,12 @@ Summary: Community-developed python astronomy tools
License: BSD-3-Clause License: BSD-3-Clause
URL: https://astropy.org URL: https://astropy.org
Source: https://files.pythonhosted.org/packages/source/a/astropy/astropy-%{version}.tar.gz Source: https://files.pythonhosted.org/packages/source/a/astropy/astropy-%{version}.tar.gz
# PATCH-FIX-UPSTREAM astropy-pr10433-wcslib73-tests.patch gh#astropy/astropy#10433 -- allow system wcslib 7.3
Patch0: astropy-pr10433-wcslib73-tests.patch
# PATCH-FIX-UPSTREAM astropy-pr10440-wcs-datfix.patch gh#astropy/astropy#10440 -- allow system wcslib 7.3
Patch1: astropy-pr10440-wcs-datfix.patch
# PATCH-FIX-UPSTREAM astropy-pr10545-remove-newline-3d_cd_hdr.patch gh#astropy/astropy#10545 -- clean up newlines after pytest output
Patch2: astropy-pr10545-remove-newline-3d_cd_hdr.patch
# Mark wcs headers as false positives for devel-file-in-non-devel-package # Mark wcs headers as false positives for devel-file-in-non-devel-package
# These are used by the python files so they must be available. # These are used by the python files so they must be available.
Source100: python-astropy-rpmlintrc Source100: python-astropy-rpmlintrc
@ -111,6 +117,10 @@ managing them.
%if !%{with test} %if !%{with test}
%prep %prep
%setup -q -n astropy-%{version} %setup -q -n astropy-%{version}
%autopatch -p1
# Disable test failure on DeprecationWarnings
sed -i "/enable_deprecations_as_exceptions(/,/)/ d" astropy/conftest.py
# Make sure bundled libs are not used # Make sure bundled libs are not used
rm -rf cextern/expat rm -rf cextern/expat
@ -158,7 +168,7 @@ $python -O -m compileall -d %{$python_sitearch} %{buildroot}%{$python_sitearch}/
%endif %endif
# http://docs.astropy.org/en/latest/development/testguide.html#running-tests # http://docs.astropy.org/en/latest/development/testguide.html#running-tests
# running pytest directly would require building the extensions inplace # running pytest directly would require building the extensions inplace
%python_exec -B -c "import astropy; astropy.test(args=\"-v %{?skip_pytest}\")" %python_exec -B -c "import astropy, sys; sys.exit(astropy.test(args=\"-v %{?skip_pytest}\"))"
%endif %endif
%if !%{with test} %if !%{with test}