Accepting request 1324294 from devel:languages:python:numeric

OBS-URL: https://build.opensuse.org/request/show/1324294
OBS-URL: https://build.opensuse.org/package/show/openSUSE:Factory/python-h5py?expand=0&rev=34

h5py-3.15.1.tar.gz

@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:c86e3ed45c4473564de55aa83b6fc9e5ead86578773dfbd93047380042e26b69
+size 426236

python-h5py.changes

@@ -1,3 +1,112 @@
+-------------------------------------------------------------------
+Mon Dec 22 12:05:57 UTC 2025 - Ben Greiner <code@bnavigator.de>
+
+- Update to 3.15.1
+  ## New features
+  * h5py.Dataset.iter_chunks() accepts slice objects with the None
+    value for slice.start and slice.stop attributes, or integers
+    (PR 2657). Example: dset.iter_chunks((slice(None, None), 4)).
+    This is equivalent to dset[:,4].
+  * A new track_times parameter when creating a group or a file to
+    control whether creation, modification, change and access
+    timestamps are stored for group objects (PR 2611). This is
+    False by default.
+  * Work to better support free-threaded mode in CPython (PR 2658,
+    PR 2678). This is not substantially tested yet, but some of the
+    most glaring issues have been resolved. See free-threading.
+  ## Breaking Changes and Deprecations
+  * Support for Python 3.9 was dropped. Python 3.10 or newer is now
+    required to build or install h5py from this version on (PR
+    2640).
+  * The minimum supported version of HDF5 is now 1.10.7, and within
+    the 1.12 series the minimum supported version is now 1.12.1 (PR
+    2605).
+  * Timestamps are no longer stored by default for groups
+    (including the root group) if the track_order parameter is set
+    (PR 2611). Previously, setting this parameter also caused
+    timestamps to be stored in the file.
+  ## Bug fixes
+  * Fixed h5py.h5p.PropLAID.get_elink_prefix method (PR 2712).
+  * Fixed a segfault reading unallocated variable length string
+    data as NumPy variable length strings (PR 2630).
+  * Fixed an error reading certain types of variable length data
+    where an entry has 0 length (PR 2717).
+  * Fixed some SyntaxWarnings which might become errors in a future
+    Python version (PR 2597).
+
+-------------------------------------------------------------------
+Mon Aug 25 04:12:26 UTC 2025 - Steve Kowalik <steven.kowalik@suse.com>
+
+- Update to 3.14.0:
+  * New Features
+    + On NumPy 2.x, it is now possible to read and write native NumPy
+      variable-width strings, a.k.a. StringDType() or dtype='T', which are
+      more efficient than arrays of Python string objects.
+    + New File.in_memory constructor to conveniently build an HDF5 file
+      structure in memory
+    + Dataset views returned by Dataset.astype, Dataset.asstr and
+      Dataset.fields have gained the .dtype, .ndim, .shape, and .size
+      attributes.
+    + Opening an existing dataset in a file is faster since it now only loads
+      the "dataset creation property list" when required.
+  * Exposing HDF5 functions
+    + h5py.h5d.DatasetID.write_direct_chunk now wraps H5Dwrite_chunk instead
+      of H5DOwrite_chunk.
+    + H5Sselect_shape_same exposed as h5py.h5s.SpaceID.select_shape_same.
+  * Bug fixes
+    + Fixed a problem with phil Lock handling in forked processes when h5py
+      is also used from other threads.
+    + Fixed an error using :meth:`.Dataset.read_direct` with a zero-size
+      selection.
+    + Fix various bugs when applying np.array or np.asarray to a Dataset view
+      returned by Dataset.astype, Dataset.asstr, or Dataset.fields.
+  * Building h5py
+    + setuptools 77 or above is now required, due to changes in the license
+      metadata in pyproject.toml.
+    + Numpy variable-width string support does not alter the build process:
+      you need NumPy 2.x to build.
+    + Fixed building h5py with Numpy 2.3.
+
+-------------------------------------------------------------------
+Fri Nov 15 19:11:37 UTC 2024 - Ben Greiner <code@bnavigator.de>
+
+- Update to 3.12.1
+  ## Breaking changes
+  * Support for Python 3.8 was dropped (PR 2471). Python 3.9 or
+    newer is required to build or install h5py 3.12.
+  * The minimum supported version of HDF5 was increased to 1.10.6
+    (PR 2486). If you need h5py on HDF5 1.10.4 or .5, please use
+    h5py 3.11.
+  * The fill time for chunked storage was previously set to
+    h5d.FILL_TIME_ALLOC. Now this the default comes from HDF5,
+    which uses h5d.FILL_TIME_IFSET (equivalent to
+    fill_time='ifset') (PR 2463). Please use fill_time='alloc' if
+    the change is a problem for you.
+  ## Exposing HDF5 functions
+  * Expose fill time option in dataset creation property list via
+    the fill_time parameter in create_dataset() (PR 2463).
+  ## Bug fixes
+  * Fix an error where native float16 support is not available (PR
+    2422).
+  * Fixed values of H5F_close_degree_t enum (PR 2433).
+  * External links are now accessed with libhdf5’s default access
+    properties (PR 2433).
+  * Fix the iteration order for the root group in a file with
+    creation order tracked (PR 2410).
+  * Fixed some deprecation warnings from NumPy (PR 2416).
+ ## Building h5py
+  * Require a newer version of mpi4py for Python 3.12 (PR 2418).
+  * The test suite is now configured to fail on unexpected warnings
+    (PR 2428).
+  * The generated Cython wrapper code (defs.* & _hdf5.pxd) is now
+    specific to the version of HDF5 it’s building for. If the
+    version of HDF5 has changed, api_gen.py should be run
+    automatically to recreate this (PR 2479, PR 2480).
+  * Various PRs modernising & cleaning up old Cython code, see the
+    3.12 milestone on Github for details.
+- Don't %requires_eq libhdf5{%?my_suffix}: not a package but a
+  capability of e.g. libhdf5-200 -- boo#1196682
+
 -------------------------------------------------------------------
 Mon Jul  8 06:51:52 UTC 2024 - Steve Kowalik <steven.kowalik@suse.com>
 

python-h5py.spec

@@ -1,7 +1,7 @@
 #
 # spec file for package python-h5py
 #
-# Copyright (c) 2024 SUSE LLC
+# Copyright (c) 2025 SUSE LLC and contributors
 #
 # All modifications and additions to the file contributed by third parties
 # remain the property of their copyright owners, unless otherwise agreed
@@ -48,33 +48,32 @@
 %endif
 # /SECTION MPI DEFINITIONS
 Name:           %{pname}%{?my_suffix}
-Version:        3.11.0
+Version:        3.15.1
 Release:        0
 Summary:        Python interface to the Hierarchical Data Format library
 License:        BSD-3-Clause
 Group:          Development/Libraries/Python
 URL:            https://github.com/h5py/h5py
 Source:         https://files.pythonhosted.org/packages/source/h/h5py/h5py-%{version}.tar.gz
-BuildRequires:  %{python_module Cython >= 0.29 with %python-Cython < 4}
-BuildRequires:  %{python_module devel >= 3.8}
-BuildRequires:  %{python_module numpy-devel >= 1.17.3}
+BuildRequires:  %{python_module Cython >= 3 with %python-Cython < 4}
+BuildRequires:  %{python_module devel >= 3.10}
+BuildRequires:  %{python_module numpy-devel >= 2.0.0}
 BuildRequires:  %{python_module pip}
-BuildRequires:  %{python_module pkgconfig}
-BuildRequires:  %{python_module pytest}
-BuildRequires:  %{python_module setuptools >= 61}
+BuildRequires:  %{python_module pkgconfig >= 1.5.5}
+BuildRequires:  %{python_module pytest >= 8.2.2}
+BuildRequires:  %{python_module setuptools >= 77.0.1}
 BuildRequires:  %{python_module wheel}
 BuildRequires:  fdupes
-BuildRequires:  hdf5%{?my_suffix}-devel
+BuildRequires:  hdf5%{?my_suffix}-devel >= 1.11.5
 BuildRequires:  python-rpm-macros
-%requires_eq    hdf5%{?my_suffix}
-%requires_eq    libhdf5%{?my_suffix}
-Requires:       python-numpy >= 1.17.3
+# Work around requires_eq not finding the capability libhdf5. Need the Requires before the macro for the python subpackage rewriter
+Requires:       %(rpm -q --requires hdf5%{?my_suffix}-devel | grep 'libhdf5.* = ' | head -n 1)
+Requires:       python-numpy >= 1.21.2
 %if %{with mpi}
 BuildRequires:  %{mpi_flavor}%{mpi_vers}-devel
-BuildRequires:  %{python_module mpi4py >= 3.1.1 if %python-base < 3.11}
-BuildRequires:  %{python_module mpi4py >= 3.1.4 if %python-base >= 3.11}
-BuildRequires:  %{python_module pytest-mpi}
-Requires:       python-mpi4py >= 3.1.1
+BuildRequires:  %{python_module mpi4py >= 3.1.2}
+BuildRequires:  %{python_module pytest-mpi >= 0.6}
+Requires:       python-mpi4py >= 3.1.2
 %endif
 %python_subpackages