Accepting request 749762 from devel:languages:python:numeric

OBS-URL: https://build.opensuse.org/request/show/749762
OBS-URL: https://build.opensuse.org/package/show/openSUSE:Factory/python-nibabel?expand=0&rev=3

fix_numpy_1_17.patch

@@ -1,23 +0,0 @@
-From 86b4fbedfb6919fab4e3ffe21536c5df2633c57b Mon Sep 17 00:00:00 2001
-From: "Christopher J. Markiewicz" <markiewicz@stanford.edu>
-Date: Sat, 15 Jun 2019 14:28:04 +0200
-Subject: [PATCH] FIX/TEST: Numpy casting rules have gotten more strict, raise
- different exception
-
----
- nibabel/tests/test_volumeutils.py | 2 +-
- 1 file changed, 1 insertion(+), 1 deletion(-)
-
-diff --git a/nibabel/tests/test_volumeutils.py b/nibabel/tests/test_volumeutils.py
-index 06df9eb6a..fcdc5c271 100644
---- a/nibabel/tests/test_volumeutils.py
-+++ b/nibabel/tests/test_volumeutils.py
-@@ -700,7 +700,7 @@ def test_a2f_non_numeric():
-     # Some versions of numpy can cast structured types to float, others not
-     try:
-         arr.astype(float)
--    except ValueError:
-+    except (TypeError, ValueError):
-         pass
-     else:
-         back_arr = write_return(arr, fobj, float)

nibabel-2.4.1.tar.gz

@@ -1,3 +0,0 @@
-version https://git-lfs.github.com/spec/v1
-oid sha256:f165ff1cb4464902d6594eb2694e2cfb6f8b9fe233b856c976c3cff623ee0e17
-size 4591906

nibabel-2.5.1.tar.gz

@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:83ecac4773ece02c49c364d99b465644c17cc66f1719560117e74991d9eb566b
+size 4598466

python-nibabel.changes

@@ -1,3 +1,39 @@
+-------------------------------------------------------------------
+Tue Nov 19 20:41:07 UTC 2019 - Todd R <toddrme2178@gmail.com>
+
+- Update to version 2.5.1
+  + Enhancements
+    * Ignore endianness in ``nib-diff`` if values match
+  + Bug fixes
+    * Correctly handle Philips DICOMs w/ derived volume
+    * Raise CSA tag limit to 1000, parametrize for future relaxing
+    * Coerce data types to match NIfTI intent codes when writing GIFTI data
+      arrays
+  + Maintenance
+    * Require h5py 2.10 for Windows + Python < 3.6 to resolve unexpected dtypes
+      in Minc2 data
+  + API changes and deprecations
+    * Deprecate ``nicom.dicomwrappers.Wrapper.get_affine()`` in favor of ``affine``
+      property; final removal in nibabel 4.0
+- Update to version 2.5.0
+  + Enhancements
+    * Add SerializableImage class with to/from_bytes methods
+    * Check CIFTI-2 data shape matches shape described by header
+  + Bug fixes
+    * Handle stricter numpy casting rules in tests
+    * TRK header fields flipped in files written on big-endian systems
+    * Load multiframe ECAT images with Python 3
+  + Maintenance
+    * Fix CodeCov paths on Appveyor for more accurate coverage
+    * Move to setuptools and reduce use ``nisext`` functions
+    * Better handle test setup/teardown
+  + API changes and deprecations
+    * Effect threatened warnings and set some deprecation timelines
+    * Trackvis methods now default to v2 formats
+    * ``nibabel.trackvis`` scheduled for removal in nibabel 4.0
+    * ``nibabel.minc`` and ``nibabel.MincImage`` will be removed in nibabel 3.0
+- Drop upstream-included fix_numpy_1_17.patch
+
 -------------------------------------------------------------------
 Mon Jul 29 18:56:10 UTC 2019 - Todd R <toddrme2178@gmail.com>
 

python-nibabel.spec

@@ -12,38 +12,35 @@
 # license that conforms to the Open Source Definition (Version 1.9)
 # published by the Open Source Initiative.
 
-# Please submit bugfixes or comments via http://bugs.opensuse.org/
+# Please submit bugfixes or comments via https://bugs.opensuse.org/
+#
 
 
 %{?!python_module:%define python_module() python-%{**} python3-%{**}}
 Name:           python-nibabel
-Version:        2.4.1
+Version:        2.5.1
 Release:        0
-License:        MIT
 Summary:        Tool to access multiple neuroimaging data formats
-Url:            http://nipy.org/nibabel
-Group:          Development/Languages/Python
+License:        MIT
+URL:            https://nipy.org/nibabel
 Source:         https://files.pythonhosted.org/packages/source/n/nibabel/nibabel-%{version}.tar.gz
-# PATCH-FIX-UPSTREAM fix_numpy_1_17.patch gh#/nipy/nibabel#768
-Patch1:         fix_numpy_1_17.patch
 BuildRequires:  %{python_module setuptools >= 30.3.0}
 BuildRequires:  fdupes
 BuildRequires:  python-rpm-macros
+Requires:       python-numpy >= 1.8
+Requires:       python-six >= 1.3
+Recommends:     python-dicom >= 0.9.9
+BuildArch:      noarch
 # SECTION test requirements
-BuildRequires:  %{python_module numpy >= 1.8}
 BuildRequires:  %{python_module mock}
 BuildRequires:  %{python_module nose >= 0.10.1}
+BuildRequires:  %{python_module numpy >= 1.8}
 BuildRequires:  %{python_module six >= 1.3}
 BuildRequires:  python-bz2file
 # /SECTION
-Requires:       python-numpy >= 1.8
-Requires:       python-six >= 1.3
 %ifpython2
 Requires:       python-bz2file
 %endif
-Recommends:     python-dicom >= 0.9.9
-BuildArch:      noarch
-
 %python_subpackages
 
 %description
@@ -56,7 +53,6 @@ very limited support for DICOM.
 
 %prep
 %setup -q -n nibabel-%{version}
-%patch1 -p1
 
 %build
 %python_build