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Accepting request 1188927 from devel:languages:python:numeric

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- Switch to autosetup macro.
- Restrict numpy to < 2 because it isn't currently supported.
- Add patch support-pytest-8.patch:
  * Use pytest setup/teardown methods.

OBS-URL: https://build.opensuse.org/request/show/1188927
OBS-URL: https://build.opensuse.org/package/show/openSUSE:Factory/python-nibabel?expand=0&rev=12
This commit is contained in:
Ana Guerrero
2024-07-22 15:18:36 +00:00
committed by Git OBS Bridge
parent a830a4ed5b 2024221375
commit fbbd5f0c1a
3 changed files with 73 additions and 3 deletions
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8
python-nibabel.changes
View File

@@ -1,3 +1,11 @@
-------------------------------------------------------------------
Mon Jul 22 05:51:49 UTC 2024 - Steve Kowalik <steven.kowalik@suse.com>
- Switch to autosetup macro.
- Restrict numpy to < 2 because it isn't currently supported.
- Add patch support-pytest-8.patch:
* Use pytest setup/teardown methods.
-------------------------------------------------------------------
Mon Mar 25 20:12:25 UTC 2024 - Dirk Müller <dmueller@suse.com>

8
python-nibabel.spec
View File

@@ -25,15 +25,17 @@ License: MIT
URL: https://nipy.org/nibabel
# SourceRepository: https://github.com/nipy/nibabel
Source: https://files.pythonhosted.org/packages/source/n/nibabel/nibabel-%{version}.tar.gz
# PATCH-FIX-UPSTREAM gh#nipy/nibabel#1325
Patch0: support-pytest-8.patch
BuildRequires: %{python_module base >= 3.8}
BuildRequires: %{python_module hatch-vcs}
BuildRequires: %{python_module hatchling}
BuildRequires: %{python_module pip}
BuildRequires: fdupes
BuildRequires: python-rpm-macros
Requires: python-numpy >= 1.20
Requires: python-packaging => 17
Requires: (python-importlib-resources >= 1.3 if python-base < 3.9)
Requires: (python-numpy >= 1.20 with python-numpy < 2)
Requires(post): update-alternatives
Requires(postun): update-alternatives
Recommends: python-Pillow
@@ -45,7 +47,7 @@ BuildArch: noarch
BuildRequires: %{python_module Pillow}
BuildRequires: %{python_module h5py}
BuildRequires: %{python_module importlib-resources >= 1.3 if %python-base < 3.9}
BuildRequires: %{python_module numpy >= 1.20}
BuildRequires: %{python_module numpy >= 1.20 with %python-numpy < 2}
BuildRequires: %{python_module packaging >= 17}
BuildRequires: %{python_module pydicom >= 1}
BuildRequires: %{python_module pytest-doctestplus}
@@ -67,7 +69,7 @@ FreeSurfer geometry, annotation and morphometry files. There is some
very limited support for DICOM.
%prep
%setup -q -n nibabel-%{version}
%autosetup -p1 -n nibabel-%{version}
find nibabel -name .gitignore -delete
sed -i '1{/^!#/d}' nibabel/cmdline/*.py
chmod a-x nibabel/cmdline/*.py

60
support-pytest-8.patch Normal file
View File

@@ -0,0 +1,60 @@
From 82c8588528d5a06fd0dfc99e3cbb83d5cc299e2b Mon Sep 17 00:00:00 2001
From: Sandro <devel@penguinpee.nl>
Date: Wed, 29 May 2024 00:20:34 +0200
Subject: [PATCH] Replace deprecated setup() and teardown()
Those were compatibility functions for porting from nose. They are now
deprecated and have been removed from pytest.
This will make all tests compatible with pytests 8.x.
---
nibabel/streamlines/tests/test_streamlines.py | 2 +-
nibabel/tests/test_deprecated.py | 4 ++--
nibabel/tests/test_dft.py | 2 +-
3 files changed, 4 insertions(+), 4 deletions(-)
diff --git a/nibabel/streamlines/tests/test_streamlines.py b/nibabel/streamlines/tests/test_streamlines.py
index f0bd9c7c4..53a43c393 100644
--- a/nibabel/streamlines/tests/test_streamlines.py
+++ b/nibabel/streamlines/tests/test_streamlines.py
@@ -20,7 +20,7 @@
DATA = {}
-def setup():
+def setup_module():
global DATA
DATA['empty_filenames'] = [pjoin(data_path, 'empty' + ext) for ext in FORMATS.keys()]
DATA['simple_filenames'] = [pjoin(data_path, 'simple' + ext) for ext in FORMATS.keys()]
diff --git a/nibabel/tests/test_deprecated.py b/nibabel/tests/test_deprecated.py
index f1c3d517c..01636632e 100644
--- a/nibabel/tests/test_deprecated.py
+++ b/nibabel/tests/test_deprecated.py
@@ -14,12 +14,12 @@
from nibabel.tests.test_deprecator import TestDeprecatorFunc as _TestDF
-def setup():
+def setup_module():
# Hack nibabel version string
pkg_info.cmp_pkg_version.__defaults__ = ('2.0',)
-def teardown():
+def teardown_module():
# Hack nibabel version string back again
pkg_info.cmp_pkg_version.__defaults__ = (pkg_info.__version__,)
diff --git a/nibabel/tests/test_dft.py b/nibabel/tests/test_dft.py
index 654af9827..6c6695b16 100644
--- a/nibabel/tests/test_dft.py
+++ b/nibabel/tests/test_dft.py
@@ -26,7 +26,7 @@
data_dir = pjoin(dirname(__file__), 'data')
-def setUpModule():
+def setup_module():
if os.name == 'nt':
raise unittest.SkipTest('FUSE not available for windows, skipping dft tests')
if not have_dicom: