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Accepting request 1046448 from devel:languages:python:numeric

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OBS-URL: https://build.opensuse.org/request/show/1046448
OBS-URL: https://build.opensuse.org/package/show/openSUSE:Factory/python-numpy?expand=0&rev=111
This commit is contained in:
Dominique Leuenberger 2023-01-06 16:04:43 +00:00 committed by Git OBS Bridge
commit eefc1342c8
6 changed files with 118 additions and 24 deletions
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3
numpy-1.23.4.tar.gz
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@ -1,3 +0,0 @@
version https://git-lfs.github.com/spec/v1
oid sha256:ed2cc92af0efad20198638c69bb0fc2870a58dabfba6eb722c933b48556c686c
size 10728765

3
numpy-1.24.1.tar.gz Normal file
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@ -0,0 +1,3 @@
version https://git-lfs.github.com/spec/v1
oid sha256:2386da9a471cc00a1f47845e27d916d5ec5346ae9696e01a8a34760858fe9dd2
size 10903184

14
numpy-1.9.0-remove-__declspec.patch
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@ -13,14 +13,16 @@ build to fail. Since this is windows-specific, it can be
safely removed.
--- a/numpy/core/setup_common.py
+++ b/numpy/core/setup_common.py
@@ -226,7 +226,7 @@ OPTIONAL_FUNCTION_ATTRIBUTES = [('__attr
]
Index: numpy-1.24.0/numpy/core/setup_common.py
===================================================================
--- numpy-1.24.0.orig/numpy/core/setup_common.py
+++ numpy-1.24.0/numpy/core/setup_common.py
@@ -141,7 +141,7 @@ OPTIONAL_FILE_FUNCS = ["ftello", "fseeko
OPTIONAL_MISC_FUNCS = ["backtrace", "madvise"]
# variable attributes tested via "int %s a" % attribute
-OPTIONAL_VARIABLE_ATTRIBUTES = ["__thread", "__declspec(thread)"]
+OPTIONAL_VARIABLE_ATTRIBUTES = ["__thread"]
# Subset of OPTIONAL_STDFUNCS which may already have HAVE_* defined by Python.h
OPTIONAL_STDFUNCS_MAYBE = [
# Subset of OPTIONAL_*_FUNCS which may already have HAVE_* defined by Python.h
OPTIONAL_FUNCS_MAYBE = [

7
python-numpy-rpmlintrc
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@ -1,3 +1,6 @@
# This file is required for testing
addFilter("devel-file-in-non-devel-package.*/usr/lib.*/python.*/site-packages/numpy/f2py/tests/src/array_from_pyobj/wrapmodule.c")
# These files are required for testing (and testing the package on a live system)
addFilter("devel-file-in-non-devel-package.*numpy/f2py/tests/src/array_from_pyobj/wrapmodule.c")
addFilter("devel-file-in-non-devel-package.*numpy/core/tests/examples")
addFilter("devel-file-in-non-devel-package.*numpy/core/tests/data")
addFilter("hidden-file-or-dir .*/numpy/f2py/tests/src/assumed_shape/.f2py_f2cmap")
addFilter("hidden-file-or-dir .*/numpy/f2py/tests/src/f2cmap/.f2py_f2cmap")

58
python-numpy.changes
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@ -1,3 +1,61 @@
-------------------------------------------------------------------
Mon Jan 2 19:31:48 UTC 2023 - Ben Greiner <code@bnavigator.de>
- Update to 1.24.1
* NumPy 1.24.1 is a maintenance release that fixes bugs and
regressions discovered after the 1.24.0 release. The Python
versions supported by this release are 3.8-3.11.
* #22820: BLD: add workaround in setup.py for newer setuptools
* #22830: BLD: CIRRUS_TAG redux
* #22831: DOC: fix a couple typos in 1.23 notes
* #22832: BUG: Fix refcounting errors found using pytest-leaks
* #22834: BUG, SIMD: Fix invalid value encountered in several
ufuncs
* #22837: TST: ignore more np.distutils.log imports
* #22839: BUG: Do not use getdata() in np.ma.masked_invalid
* #22847: BUG: Ensure correct behavior for rows ending in
delimiter in...
* #22848: BUG, SIMD: Fix the bitmask of the boolean comparison
* #22857: BLD: Help raspian arm + clang 13 about
__builtin_mul_overflow
* #22858: API: Ensure a full mask is returned for masked_invalid
* #22866: BUG: Polynomials now copy properly (#22669)
* #22867: BUG, SIMD: Fix memory overlap in ufunc comparison loops
* #22868: BUG: Fortify string casts against floating point
warnings
* #22875: TST: Ignore nan-warnings in randomized out tests
* #22883: MAINT: restore npymath implementations needed for
freebsd
* #22884: BUG: Fix integer overflow in in1d for mixed integer
dtypes #22877
* #22887: BUG: Use whole file for encoding checks with
charset_normalizer.
- Drop numpy-distutils-ignore.patch fixed upstream
-------------------------------------------------------------------
Mon Dec 19 13:36:35 UTC 2022 - Ben Greiner <code@bnavigator.de>
- Update to 1.24.0
* The NumPy 1.24.0 release continues the ongoing work to improve
the handling and promotion of dtypes, increase the execution
speed, and clarify the documentation. There are also a large
number of new and expired deprecations due to changes in
promotion and cleanups. This might be called a deprecation
release. Highlights are:
- Many new deprecations, check them out.
- Many expired deprecations,
- New F2PY features and fixes.
- New “dtype” and “casting” keywords for stacking functions.
* For a detailed description see
https://numpy.org/doc/stable/release/1.24.0-notes.html
- Add numpy-distutils-ignore.patch gh#numpy/numpy#22828
- Fix running the tests: Actually fail on errors
-------------------------------------------------------------------
Wed Dec 14 20:59:50 UTC 2022 - Ben Greiner <code@bnavigator.de>
- Support builds without any primary python3 package (:backports)
-------------------------------------------------------------------
Thu Oct 20 13:48:08 UTC 2022 - Ben Greiner <code@bnavigator.de>

57
python-numpy.spec
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@ -1,7 +1,7 @@
#
# spec file
#
# Copyright (c) 2022 SUSE LLC
# Copyright (c) 2023 SUSE LLC
#
# All modifications and additions to the file contributed by third parties
# remain the property of their copyright owners, unless otherwise agreed
@ -17,9 +17,10 @@
%global flavor @BUILD_FLAVOR@%{nil}
%define ver 1.23.4
%define _ver 1_23_4
%define ver 1.24.1
%define _ver 1_24_1
%define pname python-numpy
%define plainpython python
%define hpc_upcase_trans_hyph() %(echo %{**} | tr [a-z] [A-Z] | tr '-' '_')
%if "%{flavor}" == ""
%bcond_with hpc
@ -85,22 +86,23 @@ Patch1: numpy-1.9.0-remove-__declspec.patch
BuildRequires: %{python_module Cython >= 0.29.30}
BuildRequires: %{python_module base >= 3.8}
BuildRequires: %{python_module devel}
BuildRequires: %{python_module hypothesis >= 6.24.1}
BuildRequires: %{python_module pytest >= 6.2.5}
BuildRequires: %{python_module pytest-xdist}
BuildRequires: %{python_module setuptools >= 60.0.0}
BuildRequires: %{python_module testsuite}
BuildRequires: gcc-c++
BuildRequires: python-rpm-macros >= 20210929
BuildConflicts: gcc11 < 11.2
%if 0%{?suse_version}
BuildRequires: fdupes
%endif
# SECTION test requirements
BuildRequires: %{python_module pytest >= 6.2.5}
BuildRequires: %{python_module hypothesis >= 6.24.1}
BuildRequires: %{python_module pytest-xdist}
BuildRequires: %{python_module testsuite}
BuildRequires: %{python_module typing-extensions >= 4.2.0}
# /SECTION
%if %{without hpc}
# Last version which packaged %%{_bindir}/f2py without update-alternatives
# Protect it from substitution
%define oldpy_numpy python-numpy
Conflicts: %{oldpy_numpy} <= 1.12.0
Conflicts: %{plainpython}-numpy <= 1.12.0
%if 0%{?suse_version}
BuildRequires: gcc-fortran
%else
@ -149,6 +151,7 @@ basic linear algebra and random number generation.
Summary: Development files for numpy applications
Requires: %{name} = %{version}
Requires: python-devel
Requires: %plainpython(abi) = %{python_version}
%if %{without hpc}
%if %{with openblas}
Requires: openblas-devel
@ -202,6 +205,9 @@ export CFLAGS="%{optflags} -fno-strict-aliasing"
%if !%{with hpc}
%python_clone -a %{buildroot}%{_bindir}/f2py
%python_expand rm %{buildroot}%{$python_sitearch}/numpy/core/include/numpy/.doxyfile
%else
rm %{buildroot}%{p_python_sitearch}/numpy/core/include/numpy/.doxyfile
%endif
%if 0%{?suse_version}
@ -253,6 +259,7 @@ EOF
%endif
%check
# https://numpy.org/doc/stable/dev/development_environment.html#running-tests
%if %{without hpc}
export PATH="%{buildroot}%{_bindir}:$PATH"
@ -263,6 +270,12 @@ pushd testing
# flaky tests
test_failok+=" or test_structured_object_indexing"
test_failok+=" or test_structured_object_item_setting"
# flaky due to memory consumption
test_failok+=" or test_big_arrays"
# gh#numpy/numpy#22825
test_failok+=" or TestPrintOptions"
# gh#numpy/numpy#22835
test_failok+=" or test_keepdims_out"
# boo#1148173 gh#numpy/numpy#14438
%ifarch ppc64 ppc64le
test_failok+=" or test_generalized_sq"
@ -272,6 +285,10 @@ test_failok+=" or test_generalized_sq"
test_failok+=" or TestF77ReturnCharacter"
test_failok+=" or TestF90ReturnCharacter"
%endif
# missing instruction set
%ifarch s390x
test_failok+=" or test_truncate_f32"
%endif
%ifarch %{ix86}
# (arm 32-bit seems okay here)
# gh#numpy/numpy#18387
@ -279,6 +296,13 @@ test_failok+=" or test_pareto"
# gh#numpy/numpy#18388
test_failok+=" or test_float_remainder_overflow"
%endif
%ifarch %{ix86} %{arm32}
# too much memory for 32bit
test_failok+=" or test_identityless_reduction_huge_array"
test_failok+=" or test_huge_vectordot"
# invalid int type for 32bit
test_failok+=" or (test_kind and test_all)"
%endif
%ifarch riscv64
# These tests fail due to non-portable assumptions about the signbit of NaN
# gh#numpy/numpy#8213
@ -289,15 +313,17 @@ test_failok+=" or test_float"
echo "
import sys
import numpy
numpy.test(label='full', verbose=2,
extra_argv=['-v', '-n', 'auto', '-k'] + sys.argv[1:])
r = numpy.test(label='full', verbose=2,
extra_argv=['-v', '-n', 'auto', '-k'] + sys.argv[1:])
sys.exit(0 if r else 1)
" > runobstest.py
%{python_expand # for all python3 flavors
export PYTHONPATH=%{buildroot}%{$python_sitearch}
export PYTHONDONTWRITEBYTECODE=1
[ -n "$test_failok" ] && $python runobstest.py "${test_failok:4}" ||:
$python runobstest.py "not (${test_failok:4})"
# test_new_policy: duplicates test runs and output and does not follow our deselection
$python runobstest.py "not (test_new_policy ${test_failok})"
}
popd
@ -321,6 +347,8 @@ popd
%python_alternative %{_bindir}/f2py
%if "%{python_flavor}" == "python3" || "%{python_provides}" == "python3"
%{_bindir}/f2py3
%else
%exclude %{_bindir}/f2py3
%endif
%{_bindir}/f2py%{python_bin_suffix}
%{python_sitearch}/numpy/
@ -336,6 +364,9 @@ popd
%if "%{python_flavor}" == "python3" || "%{python_provides}" == "python3"
%{p_bindir}/f2py
%{p_bindir}/f2py3
%else
%exclude %{p_bindir}/f2py
%exclude %{p_bindir}/f2py3
%endif
%{p_bindir}/f2py%{python_bin_suffix}
%{p_python_sitearch}/numpy/