Accepting request 1005753 from devel:languages:python

OBS-URL: https://build.opensuse.org/request/show/1005753
OBS-URL: https://build.opensuse.org/package/show/openSUSE:Factory/python-pydicom?expand=0&rev=11

pydicom-1.4.2.tar.gz

@@ -1,3 +0,0 @@
-version https://git-lfs.github.com/spec/v1
-oid sha256:9488495a9f3e202d1219f7cb165aee0de31efd512d938c0226d34147ce860391
-size 35237997

pydicom-2.3.0.tar.gz

@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:dbfa081c9ad9ac8ff8a8efbd71784104db9eecf02fd775f7d7773f2183f89386
+size 2164552

python-pydicom.changes

@@ -1,3 +1,11 @@
+-------------------------------------------------------------------
+Sat Sep 24 02:04:40 UTC 2022 - John Vandenberg <jayvdb@gmail.com>
+
+- Skip a lot of tests, mostly due to missing test data, but there
+  are over 1900 still passing.
+- Update to v2.3.0
+  * See https://github.com/pydicom/pydicom/tree/master/doc/release_notes
+
 -------------------------------------------------------------------
 Fri Dec 10 07:41:02 UTC 2021 - pgajdos@suse.com
 

python-pydicom.spec

@@ -1,7 +1,7 @@
 #
 # spec file for package python-pydicom
 #
-# Copyright (c) 2021 SUSE LLC
+# Copyright (c) 2022 SUSE LLC
 #
 # All modifications and additions to the file contributed by third parties
 # remain the property of their copyright owners, unless otherwise agreed
@@ -19,21 +19,29 @@
 %{?!python_module:%define python_module() python-%{**} python3-%{**}}
 %define         oldpython python
 Name:           python-pydicom
-Version:        1.4.2
+Version:        2.3.0
 Release:        0
 Summary:        Pure python package for DICOM medical file reading and writing
 License:        MIT
 URL:            https://github.com/darcymason/pydicom
 Source:         https://files.pythonhosted.org/packages/source/p/pydicom/pydicom-%{version}.tar.gz
-BuildRequires:  %{python_module pytest}
 BuildRequires:  %{python_module setuptools}
 BuildRequires:  fdupes
 BuildRequires:  python-rpm-macros
+# SECTION test requirements
+BuildRequires:  %{python_module numpy}
+BuildRequires:  %{python_module Pillow}
+BuildRequires:  %{python_module pytest}
+BuildRequires:  %{python_module requests}
+BuildRequires:  python3-gdcm
+# /SECTION
 BuildArch:      noarch
 %ifpython2
 Obsoletes:      %{oldpython}-dicom < %{version}
 Provides:       %{oldpython}-dicom = %{version}
 %endif
+Requires(post):   update-alternatives
+Requires(postun): update-alternatives
 %python_subpackages
 
 %description
@@ -53,14 +61,54 @@ and radiotherapy objects.
 
 %install
 %python_install
+%python_clone -a %{buildroot}%{_bindir}/pydicom
+%python_expand rm -r %{buildroot}%{$python_sitelib}/pydicom/{benchmarks,tests,data/test_files}
 %python_expand %fdupes %{buildroot}%{$python_sitelib}
 
 %check
 export LANG=en_US.UTF-8
-%pytest pydicom/tests
+# Many test modules and individual tests fail due to test data not included in sdist
+# And requires https://github.com/pydicom/pydicom-data , which hasnt been
+# packaged yet. c.f. https://github.com/pydicom/pydicom-data/issues/9
+
+skips="test_fetch_data_files or test_reading_ds_with_known_tags_with_UN_VR or test_empty_bot_multi_fragments_per_frame"
+skips="$skips or test_convert_rgb_from_implicit_to_explicit_vr or test_empty_bot_too_few_fragments or test_encapsulate"
+skips="$skips or test_sequence_with_implicit_vr or test_rgb_ybr_rgb_single_frame or test_rgb_ybr_rgb_multi_frame or test_frame_by_frame"
+skips="$skips or test_specific_tags_with_unknown_length_tag or test_tag_with_unknown_length_tag_too_short or test_planar_config"
+skips="$skips or test_correct_ambiguous_vr_compressed or test_write_removes_grouplength or test_raw_elements_preserved_explicit_vr"
+skips="$skips or test_cycle_u8_1s_1f or test_encoders_gdcm or test_unsupported_syntax_raises or test_can_access_unsupported_dataset"
+skips="$skips or TestDatasetOverlayArray or TestGDCM_JPEG_LS_no_gdcm or TestGDCM_JPEG2000_no_gdcm or TestGDCM_JPEGlossy_no_gdcm"
+skips="$skips or TestGDCM_JPEGlossless_no_gdcm or TestEncodeFrame or TestEncodeSegment or TestRLEEncodeFrame or TestNumpy_ModalityLUT"
+skips="$skips or TestNumpy_PaletteColor or TestNumpy_ApplyWindowing or TestNumpy_ApplyVOI or (TestNumpy_PackBits and test_functional)"
+skips="$skips or TestNumpy_NumpyHandler or TestNumpy_GetOverlayArray or TestNumpy_NoRLEHandler or TestNumpy_RLEHandler"
+skips="$skips or TestPillowHandler_JPEG2K or TestPillowHandler_JPEG"
+# Failures only on ppc64
+skips="$skips or test_invalid_arr_dtype_raises or TestHandlerGenerateMultiplex or TestHandlerMultiplexArray"
+# Failures only on i586
+skips="$skips or test_write_file_id or test_file_id"
+
+# The ignores cause failure during test collection
+%{pytest -rs pydicom/tests \
+         --ignore pydicom/tests/test_JPEG_LS_transfer_syntax.py \
+         --ignore pydicom/tests/test_dataset.py \
+         --ignore pydicom/tests/test_gdcm_pixel_data.py \
+         --ignore pydicom/tests/test_jpeg_ls_pixel_data.py \
+         --ignore pydicom/tests/test_JPEG_LS_transfer_syntax.py \
+         --ignore pydicom/tests/test_jpeg_ls_pixel_data.py \
+         --ignore pydicom/tests/test_numpy_pixel_data.py \
+         -k "not ($skips)"
+}
+
+%post
+%python_install_alternative pydicom
+
+%postun
+%python_uninstall_alternative pydicom
 
 %files %{python_files}
+%doc README.md
 %license LICENSE
-%{python_sitelib}/*
+%python_alternative %{_bindir}/pydicom
+%{python_sitelib}/pydicom*
 
 %changelog