forked from pool/python-sidpy
- Limit numpy to < 2 due to dask-array.
OBS-URL: https://build.opensuse.org/package/show/devel:languages:python:numeric/python-sidpy?expand=0&rev=29
This commit is contained in:
Git OBS Bridge
@@ -0,0 +1,166 @@
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-------------------------------------------------------------------
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Mon Jul 8 04:52:26 UTC 2024 - Steve Kowalik <steven.kowalik@suse.com>
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- Limit numpy to < 2 due to dask-array.
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-------------------------------------------------------------------
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Thu Mar 14 10:10:54 UTC 2024 - Dirk Müller <dmueller@suse.com>
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- skip python 3.9 due to missing ipython
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-------------------------------------------------------------------
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Sun Jan 21 09:36:30 UTC 2024 - Dirk Müller <dmueller@suse.com>
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- update to 0.12.3:
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* Variance included by Boris
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* Visualizer updated to include variance by Boris
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* Visualizer updated to make it flexible by Gerd
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* Tests updated by Boris
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* get_spectrum_dims is renamed to get spectral_dims
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- update to 0.12.1:
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* updates to some of the visualizers (spectrum visualizer for
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example)
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* bug fix to Sidpy Fitter class that was preventing proper
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scaling with multiple workers
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* changes on the backend regarding getting and setting
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dimensions
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* additional tests
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- update to 0.12.0:
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* New version of sidpy has been released. The major change is
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that previous operations that would have resulted in return
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of numpy or dask arrays are now programmed to return sidpy
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dataset objects. This is particularly useful for instance
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when wishing to crop, slice, and perform standard arithmetic
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operations on sidpy datasets. The sidpy.fitter class has been
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updated to allow for complex datasets. An example notebook is
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provided here
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-------------------------------------------------------------------
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Sun Mar 27 17:22:16 UTC 2023 - Ben Greiner <code@bnavigator.de>
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- Reenable python311 with dask
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- Fix requirements
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- PEP517
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-------------------------------------------------------------------
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Mon Mar 27 16:09:40 UTC 2023 - Daniel Garcia <daniel.garcia@suse.com>
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- Disable python3.11 build, python-dask dependency doesn't support
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python3.11 yet.
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-------------------------------------------------------------------
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Wed Feb 8 12:27:54 UTC 2023 - Daniel Garcia <daniel.garcia@suse.com>
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- Update to 0.11.2
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* compatibility to numpy >1.24
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- 0.11.1
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* Minor release. Small fixes to image windowing, four dimensional visualizer,
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and adding of a structure attribute to the sidpy.dataset object.
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- 0.11
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* Added CHANNEL dimension type for sidpy dimensions (for example of usage see
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this link) . This is useful for multi-channel spectral datasets, which can
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now be plotted using the intrinsic .plot() method
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* Added updated capability on spectral visualizer to enable plotting of
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multi-channel spectra
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* Small changes with set_dimension() method to be more robust
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* Minor bug fixes
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* Updates to various tests
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- 0.10
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* This release adds a few 'under the hood' changes to the sidpy dataset
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object, with respect to chunking and folding/unfolding. Some minor edits to
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some visualization functions were also made. A new method
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visualize_fit_results() to the SidFitter class was added to aid in
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visualization of functional fits.
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- 0.0.9
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* Added fitter class and improved tests.
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-------------------------------------------------------------------
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Fri Oct 21 12:10:57 UTC 2022 - pgajdos@suse.com
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- python-six is not required
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-------------------------------------------------------------------
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Tue Apr 26 06:17:09 UTC 2022 - Steve Kowalik <steven.kowalik@suse.com>
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- Remove skip for Python 3.10, dask is now available.
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-------------------------------------------------------------------
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Sun Feb 6 08:11:00 UTC 2022 - Ben Greiner <code@bnavigator.de>
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- Update to 0.0.8
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* Support of thumbnails for icon view of directory
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* updated for new version of ipyfilechooser
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* better support of dask functions (thanks Mani).
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* nested dictionaries are now written and read from hdf5 files
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* support of 4D image sets in plotting.
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* Minor bug fixes
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-------------------------------------------------------------------
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Sat Feb 5 12:58:10 UTC 2022 - Dominique Leuenberger <dimstar@opensuse.org>
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- Skip build for python 3.10: python-dask is not (yet) compatible.
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-------------------------------------------------------------------
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Tue Dec 14 08:21:42 UTC 2021 - pgajdos@suse.com
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- pytest-runner is not required for build
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-------------------------------------------------------------------
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Wed Apr 14 18:15:43 UTC 2021 - andy great <andythe_great@pm.me>
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- Update to version 0.0.5.
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* Mathematical operations return sidpy.Dataset now instead of
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dask.array.
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-------------------------------------------------------------------
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Mon Jan 18 21:55:27 UTC 2021 - andy great <andythe_great@pm.me>
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- Disable build for python 2 and python3.6 because numpy and scipy
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don't support them.
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-------------------------------------------------------------------
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Mon Dec 21 15:52:20 UTC 2020 - andy great <andythe_great@pm.me>
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- Update to version 0.0.4a.
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* range of bug fixes
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* greatly expanded tests
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* added ore docstrings
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* simplified imports and removed unnecessary functions
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* compatibility with single core machines
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* changes to write_simple_attrs method, to now include ability to write enum objects
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* changes to minimum dimension size
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-------------------------------------------------------------------
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Mon Nov 23 14:05:29 UTC 2020 - andy great <andythe_great@pm.me>
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- Update to version 0.0.3.
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* sidpy.Dataset extend dask.array
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* sidpy.Dimension extends numpy.ndarray
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* Improved unit testing for core functions
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-------------------------------------------------------------------
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Fri Sep 18 21:08:25 UTC 2020 - andy great <andythe_great@pm.me>
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- Remove fix_tests_dir_in_site_package.patch, fix in sidpy 0.0.2.
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- Update to version 0.0.2.
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* Submodules of the main modules can be imported directly.
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E.g. import sidpy.hdf_utils instead of sidpy.hdf.hdf_utils
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* Preventing tests from being deployed into site-packages
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* Fixed bugs in sidpy.io.interface_utils.py that was causing
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problems when importing sidpy
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* Added python 3.8 support and testing
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* Improvements and bug fixes to dataset.py
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* Added plotting utilities written to support upcoming
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Dataset.plot().
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* Ported additional hdf_utils functions for copying datasets
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(now in hdf_utils) and provenance tracking within HDF files
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(now in prov_utils)
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* Added Reader class to do half the job of the existing
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Translator class
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* Translator class now shows a deprecation warning prompting
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users to start using Reader instead and populate ScopeReaders
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-------------------------------------------------------------------
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Fri Aug 14 16:26:38 UTC 2020 - andy great <andythe_great@pm.me>
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- Initial package release.
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@@ -0,0 +1,100 @@
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#
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# spec file for package python-sidpy
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#
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# Copyright (c) 2024 SUSE LLC
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#
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# All modifications and additions to the file contributed by third parties
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# remain the property of their copyright owners, unless otherwise agreed
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# upon. The license for this file, and modifications and additions to the
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# file, is the same license as for the pristine package itself (unless the
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# license for the pristine package is not an Open Source License, in which
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# case the license is the MIT License). An "Open Source License" is a
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# license that conforms to the Open Source Definition (Version 1.9)
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# published by the Open Source Initiative.
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# Please submit bugfixes or comments via https://bugs.opensuse.org/
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#
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%{?sle15_python_module_pythons}
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%define packagename sidpy
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%global skip_python39 1
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Name: python-sidpy
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Version: 0.12.3
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Release: 0
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Summary: Utilities for processing Spectroscopic and Imaging Data
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License: MIT
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URL: https://pycroscopy.github.io/sidpy/
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Source: https://github.com/pycroscopy/sidpy/archive/%{version}.tar.gz#/%{packagename}-%{version}.tar.gz
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Source99: python-sidpy.rpmlintrc
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BuildRequires: %{python_module ase}
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BuildRequires: %{python_module cytoolz}
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BuildRequires: %{python_module dask >= 0.10}
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BuildRequires: %{python_module dask-array >= 0.10}
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BuildRequires: %{python_module distributed >= 2}
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BuildRequires: %{python_module h5py >= 2.6.0}
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BuildRequires: %{python_module ipywidgets >= 5.2.2}
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BuildRequires: %{python_module joblib >= 0.11.0}
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BuildRequires: %{python_module matplotlib >= 2.0.0}
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BuildRequires: %{python_module mpi4py}
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BuildRequires: %{python_module numpy >= 1.10 with %python-numpy < 2}
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BuildRequires: %{python_module pip}
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BuildRequires: %{python_module psutil}
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BuildRequires: %{python_module pytest}
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BuildRequires: %{python_module qt5}
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BuildRequires: %{python_module scikit-learn}
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BuildRequires: %{python_module scipy}
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BuildRequires: %{python_module setuptools}
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BuildRequires: %{python_module toolz}
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BuildRequires: %{python_module wheel}
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BuildRequires: fdupes
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BuildRequires: python-rpm-macros
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Requires: python-ase
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Requires: python-cytoolz
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Requires: python-dask >= 0.10
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Requires: python-dask-array >= 0.10
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Requires: python-distributed >= 2
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Requires: python-h5py >= 2.6.0
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Requires: python-ipykernel
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Requires: python-ipympl
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Requires: python-ipython >= 6
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Requires: python-ipywidgets >= 5.2.2
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Requires: python-joblib >= 0.11.0
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Requires: python-matplotlib >= 2.0.0
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Requires: python-psutil
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Requires: python-scikit-learn
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Requires: python-scipy
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Requires: python-toolz
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Requires: (python-numpy >= 1.10 with python-numpy < 2)
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Recommends: python-mpi4py
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Recommends: python-qt5
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BuildArch: noarch
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%python_subpackages
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%description
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Python utilities for storing, visualizing, and processing Spectroscopic and Imaging Data (SID).
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%prep
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%setup -q -n %{packagename}-%{version}
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# https://github.com/pycroscopy/sidpy/issues/142
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sed -i -e /pytest-runner/d -e /six/d setup.py
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%build
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%pyproject_wheel
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%install
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%pyproject_install
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%python_expand %fdupes %{buildroot}%{$python_sitelib}
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%check
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# Broken test
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donttest="test_standard_serial_compute_few_jobs"
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%pytest -k "not $donttest"
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%files %{python_files}
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%doc README.rst
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%license LICENSE
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%{python_sitelib}/%{packagename}-%{version}*-info
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%{python_sitelib}/%{packagename}
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%changelog
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@@ -0,0 +1,23 @@
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## Default LFS
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*.7z filter=lfs diff=lfs merge=lfs -text
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*.bsp filter=lfs diff=lfs merge=lfs -text
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*.bz2 filter=lfs diff=lfs merge=lfs -text
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*.gem filter=lfs diff=lfs merge=lfs -text
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*.gz filter=lfs diff=lfs merge=lfs -text
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*.jar filter=lfs diff=lfs merge=lfs -text
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*.lz filter=lfs diff=lfs merge=lfs -text
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*.lzma filter=lfs diff=lfs merge=lfs -text
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*.obscpio filter=lfs diff=lfs merge=lfs -text
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*.oxt filter=lfs diff=lfs merge=lfs -text
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*.pdf filter=lfs diff=lfs merge=lfs -text
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*.png filter=lfs diff=lfs merge=lfs -text
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*.rpm filter=lfs diff=lfs merge=lfs -text
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*.tbz filter=lfs diff=lfs merge=lfs -text
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*.tbz2 filter=lfs diff=lfs merge=lfs -text
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*.tgz filter=lfs diff=lfs merge=lfs -text
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*.ttf filter=lfs diff=lfs merge=lfs -text
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*.txz filter=lfs diff=lfs merge=lfs -text
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*.whl filter=lfs diff=lfs merge=lfs -text
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*.xz filter=lfs diff=lfs merge=lfs -text
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*.zip filter=lfs diff=lfs merge=lfs -text
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*.zst filter=lfs diff=lfs merge=lfs -text
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@@ -0,0 +1 @@
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.osc
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@@ -0,0 +1,2 @@
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# required but undeclared extra
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addFilter("python-leftover-require python.*-dask-array")
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@@ -0,0 +1,3 @@
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version https://git-lfs.github.com/spec/v1
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oid sha256:1fbf1070793126d94fc457dab7e23009a10a0bab0ac0be5ccc6cf453a65fe616
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size 15611846
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