forked from pool/python-xarray
Accepting request 1110839 from devel:languages:python:numeric
OBS-URL: https://build.opensuse.org/request/show/1110839 OBS-URL: https://build.opensuse.org/package/show/openSUSE:Factory/python-xarray?expand=0&rev=43
This commit is contained in:
Ana Guerrero
Git OBS Bridge
commit
c1c68c6223
@ -2,9 +2,11 @@
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xarray/tutorial.py | 5 ++++-
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1 file changed, 4 insertions(+), 1 deletion(-)
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--- a/xarray/tutorial.py
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+++ b/xarray/tutorial.py
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@@ -156,7 +156,10 @@ def open_dataset(
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Index: xarray-2023.8.0/xarray/tutorial.py
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===================================================================
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--- xarray-2023.8.0.orig/xarray/tutorial.py
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+++ xarray-2023.8.0/xarray/tutorial.py
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@@ -157,7 +157,10 @@ def open_dataset(
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url = f"{base_url}/raw/{version}/{path.name}"
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# retrieve the file
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@ -1,3 +1,97 @@
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-------------------------------------------------------------------
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Sun Sep 10 16:38:28 UTC 2023 - Ben Greiner <code@bnavigator.de>
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- Update to 2023.8.0
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* This release brings changes to minimum dependencies, allows
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reading of datasets where a dimension name is associated with a
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multidimensional variable (e.g. finite volume ocean model
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output), and introduces a new xarray.Coordinates object.
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## Announcements
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* The xarray.Variable class is being refactored out to a new
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project title 'namedarray'. See the design doc for more
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details. Reach out to us on this discussion topic if you have
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any thoughts.
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## What's Changed
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* Use variable name in all exceptions raised in as_variable by
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@ZedThree in #7995
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* Allow opening datasets with nD dimenson coordinate variables.
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by @dcherian in #7989
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* join together duplicate entries in the text repr by @keewis in
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#7225
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* Expose "Coordinates" as part of Xarray's public API by @benbovy
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in #7368
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* Update interpolate_na in dataset.py by @ilgast in #7974
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* Add HDF5 Section to read/write docs page by @rwegener2 in #8012
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* Add examples to docstrings by @harshitha1201 in #7937
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* (chore) min versions bump by @jhamman in #8022
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* Automatically chunk other in GroupBy binary ops. by @dcherian
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in #7684
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* change cumproduct to cumprod by @quantsnus in #8031
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* Reduce pre-commit update frequency to monthly from weekly. by
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@dcherian in #8033
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* sort when encoding coordinates for deterministic outputs by
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@itcarroll in #8034
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* Zarr : Allow setting write_empty_chunks by @RKuttruff in #8016
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* Count documentation by @Articoking in #8057
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* unpin numpy by @keewis in #8061
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- Release 2023.7.0
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* This release brings improvements to the documentation on
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wrapping numpy-like arrays, improved docstrings, and bug fixes.
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## What's Changed
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* Allow cubed arrays to be passed to flox groupby by @TomNicholas
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in #7941
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* Duck array documentation improvements by @TomNicholas in #7911
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* Docstring examples by @harshitha1201 in #7881
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* Chunked array docs by @TomNicholas in #7951
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* ensure no forward slashes in names for HDF5-based backends by
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@kmuehlbauer in #7953
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* Move absolute path finder from open_mfdataset to own function
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by @Illviljan in #7968
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* Skip broken tests on Python 3.11 and Windows by @Illviljan in
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#7972
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* Examples added to docstrings by @harshitha1201 in #7936
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* Fix typo in zarr.py by @johmathe in #7983
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* Improve explanation in example "Working with Multidimensional
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Coordinates" by @yvonnefroehlich in #7984
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* Remove hue_style from plot1d docstring by @Illviljan in #7925
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- Release 2023.06.0
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* This release adds features to curvefit, improves the
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performance of concatenation, and fixes various bugs.
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## What's Changed
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* Array API fixes for astype by @TomNicholas in #7847
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* Add type hints to test_dtypes by @Illviljan in #7858
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* adapt the pint + dask test to the newest version of pint by
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@keewis in #7855
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* Avoid explicit loop when updating OrderedSet by @Illviljan in
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#7857
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* Improve to_dask_dataframe performance by @Illviljan in #7844
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* Changed duck typing exception to: (ImportError, AttributeError)
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by @vhaasteren in #7874
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* defer to numpy for the expected result by @keewis in #7875
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* deprecate the cdms2 conversion methods by @keewis in #7876
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* Implement multidimensional initial guess and bounds for
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curvefit by @mgunyho in #7821
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* Improve concat performance by @Illviljan in #7824
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* Fix .groupby(multi index level) by @dcherian in #7830
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* don't use CacheFileManager.__del__ on interpreter shutdown by
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@keewis in #7880
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* fix polyfit changing the original object by @malmans2 in #7900
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* Fix flaky doctest for curvefit by @mgunyho in #7893
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* Ensure dtype of reindex result matches dtype of the original
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DataArray by @andersy005 in #7917
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* Add errors option to curvefit by @mgunyho in #7891
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* CF encoding should preserve vlen dtype for empty arrays by
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@tomwhite in #7862
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* use trusted publishers instead of a API token by @keewis in
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#7899
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* Add cfgrib,ipywidgets to doc env by @dcherian in #7888
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* Fix regression with grouper object on an IndexVariable by
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@mwtoews in #7920
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* Fix check for chunk_store in zarr backend by @juntyr in #7923
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* fixing rolling_window issue with cupy by @negin513 in #7938
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- Add xarray-pr8139-pandas-fill_value.patch gh#pydata/xarray#8125,
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gh#pydata/xarray#8139
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-------------------------------------------------------------------
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Wed May 31 08:23:29 UTC 2023 - Dirk Müller <dmueller@suse.com>
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@ -18,7 +18,7 @@
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%{?sle15_python_module_pythons}
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Name: python-xarray
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Version: 2023.5.0
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Version: 2023.8.0
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Release: 0
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Summary: N-D labeled arrays and datasets in Python
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License: Apache-2.0
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@ -27,15 +27,19 @@ Source: https://files.pythonhosted.org/packages/source/x/xarray/xarray-%
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# PATCH-FEATURE-UPSTREAM local_dataset.patch gh#pydata/xarray#5377 mcepl@suse.com
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# fix xr.tutorial.open_dataset to work with the preloaded cache.
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Patch0: local_dataset.patch
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# PATCH-FIX-UPSTREAM xarray-pr8139-pandas-fill_value.patch gh#pydata/xarray#8125, gh#pydata/xarray#8139
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Patch1: https://github.com/pydata/xarray/pull/8139.patch#/xarray-pr8139-pandas-fill_value.patch
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BuildRequires: %{python_module base >= 3.9}
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BuildRequires: %{python_module numpy-devel >= 1.20}
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BuildRequires: %{python_module packaging >= 21.3}
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BuildRequires: %{python_module pandas >= 1.3}
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BuildRequires: %{python_module pip}
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BuildRequires: %{python_module setuptools_scm}
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BuildRequires: %{python_module setuptools}
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BuildRequires: %{python_module wheel}
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BuildRequires: fdupes
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BuildRequires: python-rpm-macros
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Requires: python-numpy >= 1.21
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Requires: python-numpy >= 1.22
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Requires: python-packaging >= 21.3
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Requires: python-pandas >= 1.4
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Provides: python-xray = %{version}
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@ -68,9 +72,8 @@ Suggests: python-pooch
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#/SECTION
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# SECTION tests
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BuildRequires: %{python_module Bottleneck}
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# not available on python 3.11
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#BuildRequires: %%{python_module dask-dataframe}
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#BuildRequires: %%{python_module dask-diagnostics}
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BuildRequires: %{python_module dask-dataframe}
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BuildRequires: %{python_module dask-diagnostics}
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BuildRequires: %{python_module h5netcdf}
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BuildRequires: %{python_module matplotlib}
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BuildRequires: %{python_module netCDF4}
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@ -97,22 +100,22 @@ The dataset is an in-memory representation of a netCDF file.
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chmod -x xarray/util/print_versions.py
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%build
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%python_build
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%pyproject_wheel
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%install
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%python_install
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%pyproject_install
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%python_expand %fdupes %{buildroot}%{$python_sitelib}
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%check
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# OOM crashes the whole vm or even the local host running osc: https://github.com/pydata/xarray/issues/6854
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donttest="nczarr"
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# obs file open race conditions?
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donttest="(test_open_mfdataset_manyfiles and (h5netcdf or netCDF4))"
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if [ $(getconf LONG_BIT) -eq 32 ]; then
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# https://github.com/pydata/xarray/issues/5341
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# https://github.com/pydata/xarray/issues/5375
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# still precision problems in 2022.11.0
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donttest="$donttest or (test_interpolate_chunk_advanced and linear)"
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# tests for 64bit types
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donttest="$donttest or TestZarrDictStore or TestZarrDirectoryStore"
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donttest="$donttest or TestZarrDictStore or TestZarrDirectoryStore or TestZarrWriteEmpty"
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fi
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%pytest -n auto -rsEf -k "not ($donttest)" xarray
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@ -120,7 +123,6 @@ fi
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%doc README.md
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%license LICENSE licenses/
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%{python_sitelib}/xarray
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%exclude %{python_sitelib}/xarray/tests
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%{python_sitelib}/xarray-%{version}*-info
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%{python_sitelib}/xarray-%{version}.dist-info
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%changelog
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@ -1,3 +0,0 @@
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version https://git-lfs.github.com/spec/v1
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oid sha256:318a651f4182b9cecb7d1c57ad0ed9bdaed5f49c43dbb638c0a845b8faf405e8
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size 3707468
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BIN
xarray-2023.8.0.tar.gz
(Stored with Git LFS)
Normal file
BIN
xarray-2023.8.0.tar.gz
(Stored with Git LFS)
Normal file
Binary file not shown.
38
xarray-pr8139-pandas-fill_value.patch
Normal file
38
xarray-pr8139-pandas-fill_value.patch
Normal file
@ -0,0 +1,38 @@
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From 3e48312c41cb26bbd4dc83ae286444f1469b7aa2 Mon Sep 17 00:00:00 2001
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From: Maximilian Roos <m@maxroos.com>
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Date: Fri, 1 Sep 2023 19:41:41 -0700
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Subject: [PATCH] Fix pandas interpolate(fill_value=) error
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Pandas no longer has a `fill_value` parameter for `interpolate`.
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Weirdly I wasn't getting this locally, on pandas 2.1.0, only in CI on https://github.com/pydata/xarray/actions/runs/6054400455/job/16431747966?pr=8138.
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Removing it passes locally, let's see whether this works in CI
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---
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xarray/tests/test_missing.py | 6 ++++--
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1 file changed, 4 insertions(+), 2 deletions(-)
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diff --git a/xarray/tests/test_missing.py b/xarray/tests/test_missing.py
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index a6b6b1f80c..c303659116 100644
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--- a/xarray/tests/test_missing.py
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+++ b/xarray/tests/test_missing.py
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@@ -104,7 +104,8 @@ def test_interpolate_pd_compat():
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for dim in ["time", "x"]:
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actual = da.interpolate_na(method=method, dim=dim, fill_value=np.nan)
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expected = df.interpolate(
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- method=method, axis=da.get_axis_num(dim), fill_value=(np.nan, np.nan)
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+ method=method,
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+ axis=da.get_axis_num(dim),
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)
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# Note, Pandas does some odd things with the left/right fill_value
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# for the linear methods. This next line inforces the xarray
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@@ -140,7 +141,8 @@ def test_interpolate_pd_compat_non_uniform_index():
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method="linear", dim=dim, use_coordinate=True, fill_value=np.nan
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)
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expected = df.interpolate(
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- method=method, axis=da.get_axis_num(dim), fill_value=np.nan
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+ method=method,
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+ axis=da.get_axis_num(dim),
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)
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# Note, Pandas does some odd things with the left/right fill_value
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