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Accepting request 753326 from home:bnavigator:branches:devel:languages:python:numeric

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- python-control-pr345.patch: PR#345 to fix fails on some
  architectures because of machine precision

OBS-URL: https://build.opensuse.org/request/show/753326
OBS-URL: https://build.opensuse.org/package/show/devel:languages:python:numeric/python-control?expand=0&rev=6
This commit is contained in:
Benjamin Greiner
2019-12-03 17:30:22 +00:00
committed by Git OBS Bridge
parent d78dd61631
commit a39d5f1bbb
3 changed files with 247 additions and 1 deletions
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238
python-control-pr345.patch Normal file
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@@ -0,0 +1,238 @@
diff --git a/control/tests/xferfcn_test.py b/control/tests/xferfcn_test.py
index 35e411b..ee779f9 100644
--- a/control/tests/xferfcn_test.py
+++ b/control/tests/xferfcn_test.py
@@ -403,8 +403,57 @@ class TestXferFcn(unittest.TestCase):
np.testing.assert_array_equal(omega, true_omega)
# Tests for TransferFunction.pole and TransferFunction.zero.
-
- @unittest.skipIf(not slycot_check(), "slycot not installed")
+
+ def test_common_den(self):
+ """ Test the helper function to compute common denomitators."""
+
+ # _common_den() computes the common denominator per input/column.
+ # The testing columns are:
+ # 0: no common poles
+ # 1: regular common poles
+ # 2: poles with multiplicity,
+ # 3: complex poles
+ # 4: complex poles below threshold
+
+ eps = np.finfo(float).eps
+ tol_imag = np.sqrt(eps*5*2*2)*0.9
+
+ numin = [[[1.], [1.], [1.], [1.], [1.]],
+ [[1.], [1.], [1.], [1.], [1.]]]
+ denin = [[[1., 3., 2.], # 0: poles: [-1, -2]
+ [1., 6., 11., 6.], # 1: poles: [-1, -2, -3]
+ [1., 6., 11., 6.], # 2: poles: [-1, -2, -3]
+ [1., 6., 11., 6.], # 3: poles: [-1, -2, -3]
+ [1., 6., 11., 6.]], # 4: poles: [-1, -2, -3],
+ [[1., 12., 47., 60.], # 0: poles: [-3, -4, -5]
+ [1., 9., 26., 24.], # 1: poles: [-2, -3, -4]
+ [1., 7., 16., 12.], # 2: poles: [-2, -2, -3]
+ [1., 7., 17., 15.], # 3: poles: [-2+1J, -2-1J, -3],
+ np.poly([-2 + tol_imag * 1J, -2 - tol_imag * 1J, -3])]]
+ numref = np.array([
+ [[0., 0., 1., 12., 47., 60.],
+ [0., 0., 0., 1., 4., 0.],
+ [0., 0., 0., 1., 2., 0.],
+ [0., 0., 0., 1., 4., 5.],
+ [0., 0., 0., 1., 2., 0.]],
+ [[0., 0., 0., 1., 3., 2.],
+ [0., 0., 0., 1., 1., 0.],
+ [0., 0., 0., 1., 1., 0.],
+ [0., 0., 0., 1., 3., 2.],
+ [0., 0., 0., 1., 1., 0.]]])
+ denref = np.array(
+ [[1., 15., 85., 225., 274., 120.],
+ [1., 10., 35., 50., 24., 0.],
+ [1., 8., 23., 28., 12., 0.],
+ [1., 10., 40., 80., 79., 30.],
+ [1., 8., 23., 28., 12., 0.]])
+ sys = TransferFunction(numin, denin)
+ num, den, denorder = sys._common_den()
+ np.testing.assert_array_almost_equal(num[:2, :, :], numref)
+ np.testing.assert_array_almost_equal(num[2:, :, :],
+ np.zeros((3, 5, 6)))
+ np.testing.assert_array_almost_equal(den, denref)
+
def test_pole_mimo(self):
"""Test for correct MIMO poles."""
@@ -414,13 +463,12 @@ class TestXferFcn(unittest.TestCase):
np.testing.assert_array_almost_equal(p, [-2., -2., -7., -3., -2.])
- @unittest.skipIf(not slycot_check(), "slycot not installed")
def test_double_cancelling_poles_siso(self):
-
+
H = TransferFunction([1, 1], [1, 2, 1])
p = H.pole()
np.testing.assert_array_almost_equal(p, [-1, -1])
-
+
# Tests for TransferFunction.feedback
def test_feedback_siso(self):
"""Test for correct SISO transfer function feedback."""
diff --git a/control/xferfcn.py b/control/xferfcn.py
index 1ef0661..a913061 100644
--- a/control/xferfcn.py
+++ b/control/xferfcn.py
@@ -57,7 +57,6 @@ from numpy import angle, array, empty, finfo, ndarray, ones, \
polyadd, polymul, polyval, roots, sqrt, zeros, squeeze, exp, pi, \
where, delete, real, poly, nonzero
import scipy as sp
-from numpy.polynomial.polynomial import polyfromroots
from scipy.signal import lti, tf2zpk, zpk2tf, cont2discrete
from copy import deepcopy
from warnings import warn
@@ -774,8 +773,6 @@ class TransferFunction(LTI):
output numerator array num is modified to use the common
denominator for this input/column; the coefficient arrays are also
padded with zeros to be the same size for all num/den.
- num is an sys.outputs by sys.inputs
- by len(d) array.
Parameters
----------
@@ -786,17 +783,20 @@ class TransferFunction(LTI):
Returns
-------
num: array
- Multi-dimensional array of numerator coefficients. num[i][j]
- gives the numerator coefficient array for the ith input and jth
- output, also prepared for use in td04ad; matches the denorder
- order; highest coefficient starts on the left.
+ n by n by kd where n = max(sys.outputs,sys.inputs)
+ kd = max(denorder)+1
+ Multi-dimensional array of numerator coefficients. num[i,j]
+ gives the numerator coefficient array for the ith output and jth
+ input; padded for use in td04ad ('C' option); matches the
+ denorder order; highest coefficient starts on the left.
den: array
+ sys.inputs by kd
Multi-dimensional array of coefficients for common denominator
polynomial, one row per input. The array is prepared for use in
slycot td04ad, the first element is the highest-order polynomial
- coefficiend of s, matching the order in denorder, if denorder <
- number of columns in den, the den is padded with zeros
+ coefficient of s, matching the order in denorder. If denorder <
+ number of columns in den, the den is padded with zeros.
denorder: array of int, orders of den, one per input
@@ -810,16 +810,18 @@ class TransferFunction(LTI):
# Machine precision for floats.
eps = finfo(float).eps
+ real_tol = sqrt(eps * self.inputs * self.outputs)
- # Decide on the tolerance to use in deciding of a pole is complex
+ # The tolerance to use in deciding if a pole is complex
if (imag_tol is None):
- imag_tol = 1e-8 # TODO: figure out the right number to use
+ imag_tol = 2 * real_tol
# A list to keep track of cumulative poles found as we scan
# self.den[..][..]
poles = [[] for j in range(self.inputs)]
# RvP, new implementation 180526, issue #194
+ # BG, modification, issue #343, PR #354
# pre-calculate the poles for all num, den
# has zeros, poles, gain, list for pole indices not in den,
@@ -838,30 +840,37 @@ class TransferFunction(LTI):
poleset[-1].append([z, p, k, [], 0])
# collect all individual poles
- epsnm = eps * self.inputs * self.outputs
for j in range(self.inputs):
for i in range(self.outputs):
currentpoles = poleset[i][j][1]
nothave = ones(currentpoles.shape, dtype=bool)
for ip, p in enumerate(poles[j]):
- idx, = nonzero(
- (abs(currentpoles - p) < epsnm) * nothave)
- if len(idx):
- nothave[idx[0]] = False
+ collect = (np.isclose(currentpoles.real, p.real,
+ atol=real_tol) &
+ np.isclose(currentpoles.imag, p.imag,
+ atol=imag_tol) &
+ nothave)
+ if np.any(collect):
+ # mark first found pole as already collected
+ nothave[nonzero(collect)[0][0]] = False
else:
# remember id of pole not in tf
poleset[i][j][3].append(ip)
for h, c in zip(nothave, currentpoles):
if h:
+ if abs(c.imag) < imag_tol:
+ c = c.real
poles[j].append(c)
# remember how many poles now known
poleset[i][j][4] = len(poles[j])
# figure out maximum number of poles, for sizing the den
- npmax = max([len(p) for p in poles])
- den = zeros((self.inputs, npmax + 1), dtype=float)
+ maxindex = max([len(p) for p in poles])
+ den = zeros((self.inputs, maxindex + 1), dtype=float)
num = zeros((max(1, self.outputs, self.inputs),
- max(1, self.outputs, self.inputs), npmax + 1), dtype=float)
+ max(1, self.outputs, self.inputs),
+ maxindex + 1),
+ dtype=float)
denorder = zeros((self.inputs,), dtype=int)
for j in range(self.inputs):
@@ -872,11 +881,10 @@ class TransferFunction(LTI):
num[i, j, 0] = poleset[i][j][2]
else:
# create the denominator matching this input
- # polyfromroots gives coeffs in opposite order from what we use
- # coefficients should be padded on right, ending at np
- np = len(poles[j])
- den[j, np::-1] = polyfromroots(poles[j]).real
- denorder[j] = np
+ # coefficients should be padded on right, ending at maxindex
+ maxindex = len(poles[j])
+ den[j, :maxindex+1] = poly(poles[j])
+ denorder[j] = maxindex
# now create the numerator, also padded on the right
for i in range(self.outputs):
@@ -885,22 +893,15 @@ class TransferFunction(LTI):
# add all poles not found in the original denominator,
# and the ones later added from other denominators
for ip in chain(poleset[i][j][3],
- range(poleset[i][j][4], np)):
+ range(poleset[i][j][4], maxindex)):
nwzeros.append(poles[j][ip])
- numpoly = poleset[i][j][2] * polyfromroots(nwzeros).real
- # print(numpoly, den[j])
- # polyfromroots gives coeffs in opposite order => invert
+ numpoly = poleset[i][j][2] * np.atleast_1d(poly(nwzeros))
# numerator polynomial should be padded on left and right
- # ending at np to line up with what td04ad expects...
- num[i, j, np + 1 - len(numpoly):np + 1] = numpoly[::-1]
+ # ending at maxindex to line up with what td04ad expects.
+ num[i, j, maxindex+1-len(numpoly):maxindex+1] = numpoly
# print(num[i, j])
- if (abs(den.imag) > epsnm).any():
- print("Warning: The denominator has a nontrivial imaginary part: %f"
- % abs(den.imag).max())
- den = den.real
-
return num, den, denorder
def sample(self, Ts, method='zoh', alpha=None):

6
python-control.changes
View File

@@ -1,3 +1,9 @@
-------------------------------------------------------------------
Wed Nov 27 18:13:20 UTC 2019 - Benjamin Greiner <code@bnavigator.de>
- python-control-pr345.patch: PR#345 to fix fails on some
architectures because of machine precision
-------------------------------------------------------------------
Mon Nov 4 13:25:48 UTC 2019 - Benjamin Greiner <code@bnavigator.de>

4
python-control.spec
View File

@@ -1,7 +1,7 @@
#
# spec file for package python-control
#
# Copyright (c) 2019 SUSE LINUX GmbH, Nuernberg, Germany.
# Copyright (c) 2019 SUSE LLC
#
# All modifications and additions to the file contributed by third parties
# remain the property of their copyright owners, unless otherwise agreed
@@ -26,6 +26,7 @@ URL: http://python-control.sourceforge.net
Source: https://files.pythonhosted.org/packages/source/c/control/control-%{version}.tar.gz
Patch0: python-control-fixtestaugw.patch
Patch1: python-control-pr317.patch
Patch2: python-control-pr345.patch
BuildRequires: %{python_module setuptools}
BuildRequires: fdupes
BuildRequires: python-rpm-macros
@@ -54,6 +55,7 @@ operations for analysis and design of feedback control systems.
%setup -q -n control-%{version}
%patch0 -p1
%patch1 -p1
%patch2 -p1
%build
%python_build