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Accepting request 663854 from home:eeich:factory_staging

Browse Source 
- Add environment module support for HPC.
  * create baselib.conf on the fly.
- Add superlu-5.2-make.patch:
  add compiler and build flags in make.inc.
- Separate off documentation and examples to separate packages.

OBS-URL: https://build.opensuse.org/request/show/663854
OBS-URL: https://build.opensuse.org/package/show/science/superlu?expand=0&rev=3
This commit is contained in:
Stefan Brüns 2019-01-08 23:36:47 +00:00 committed by Git OBS Bridge
parent f4d2dd3913
commit 1ed97302bc
8 changed files with 223 additions and 54 deletions
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4
_multibuild Normal file
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<multibuild>
<package>gnu-hpc</package>
<package>serial</package>
</multibuild>

1
baselibs.conf
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libsuperlu5

44
superlu-5.2-make.patch Normal file
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diff -ruN SuperLU_5.2.1.old/make.inc SuperLU_5.2.1/make.inc
--- SuperLU_5.2.1.old/make.inc 2016-05-22 17:08:28.000000000 +0100
+++ SuperLU_5.2.1/make.inc 2016-09-29 21:04:09.000000000 +0100
@@ -18,14 +18,14 @@
#
# The name of the libraries to be created/linked to
#
-SuperLUroot = /home/xiaoye/Dropbox/Codes/SuperLU/SuperLU_5.2.1/build
+SuperLUroot = ../
SUPERLULIB = $(SuperLUroot)/SRC/libsuperlu.a
TMGLIB = libtmglib.a
-# BLASDEF = -DUSE_VENDOR_BLAS
-BLASLIB = /home/xiaoye/Dropbox/Codes/SuperLU/SuperLU_5.2.1/build/CBLAS/libblas.a
-LIBS = $(SUPERLULIB) /home/xiaoye/Dropbox/Codes/SuperLU/SuperLU_5.2.1/build/CBLAS/libblas.a
+BLASDEF = -DUSE_VENDOR_BLAS
+BLASLIB = -lopenblas
+LIBS = $(SUPERLULIB) $(BLASLIB)
#
# The archiver and the flag(s) to use when building archive (library)
@@ -35,10 +35,11 @@
ARCHFLAGS = cr
RANLIB = /usr/bin/ranlib
-CC = /usr/bin/cc
-CFLAGS = -O3 -DNDEBUG -DPRNTlevel=0 -DAdd_
-NOOPTS = -O0
-FORTRAN = /usr/bin/gfortran
+#CC = gcc
+CFLAGS = $(RPM_OPT_FLAGS) -fPIC -DPIC
+NOOPTS = $(RPM_OPT_FLAGS) -Os -fPIC -DPIC
+#FORTRAN = gfortran #g77
+FFLAGS = $(RPM_OPT_FLAGS) -fPIC
LOADER = $(CC)
LOADOPTS =
@@ -46,4 +47,4 @@
#
# The directory in which Matlab is installed
#
-MATLAB = /Applications/MATLAB_R2015b.app
+#MATLAB = /Applications/MATLAB_R2015b.app

6
superlu-rpmlintrc Normal file
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# This line is mandatory to access the configuration functions
from Config import *
addFilter("superlu.* library-without-ldconfig-postin")
addFilter("superlu.* library-without-ldconfig-postun")

9
superlu.changes
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@ -1,3 +1,12 @@
-------------------------------------------------------------------
Fri Oct 26 19:55:59 UTC 2018 - eich@suse.com
- Add environment module support for HPC.
* create baselib.conf on the fly.
- Add superlu-5.2-make.patch:
add compiler and build flags in make.inc.
- Separate off documentation and examples to separate packages.
-------------------------------------------------------------------
Tue Jun 14 12:56:22 UTC 2016 - badshah400@gmail.com

207
superlu.spec
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@ -1,8 +1,7 @@
#
# spec file for package superlu
#
# Copyright (c) 2016 SUSE LINUX GmbH, Nuernberg, Germany.
# Copyright (c) 2016 Christoph Grüninger foss@grueninger.de
# Copyright (c) 2019 SUSE LINUX GmbH, Nuernberg, Germany.
#
# All modifications and additions to the file contributed by third parties
# remain the property of their copyright owners, unless otherwise agreed
@ -15,20 +14,53 @@
# Please submit bugfixes or comments via http://bugs.opensuse.org/
#
# SuperLU library build that is dependent on compiler toolchain
%global flavor @BUILD_FLAVOR@%{nil}
Name: superlu
Summary: A general purpose library for the direct solution of sparse systems of linear equations
# Base package name
%define pname superlu
%define ver 5.2.1
%define _ver %(echo %{ver} | tr . _)
%if "%flavor" == ""
ExclusiveArch: do_not_build
%endif
%if "%{flavor}" == "serial"
%bcond_with hpc
%endif
%if "%{flavor}" == "gnu-hpc"
%bcond_without hpc
%global compiler_family gnu
%undefine c_f_ver
%endif
%define package_name %pname
%if %{without hpc}
%define p_includedir %_includedir
%define p_libdir %_libdir
%define _sover 5
%else
%{hpc_init -c %compiler_family %{?c_f_ver:-v %{c_f_ver}} %{?ext:-e %{ext}}}
%define package_name %{hpc_package_name %_ver}
%define p_includedir %hpc_includedir
%define p_libdir %hpc_libdir
%endif
Name: %{package_name}
Summary: A general purpose library for the direct solution of linear equations
License: BSD-3-Clause
Group: Development/Libraries/C and C++
Version: 5.2.1
Version: %{ver}
Release: 0
%define soname lib%{name}5
#Source: http://crd-legacy.lbl.gov/~xiaoye/SuperLU/superlu_5.2.1.tar.gz
Source: %{name}_%{version}-bsd.tar.gz
Source: http://crd-legacy.lbl.gov/%7Exiaoye/SuperLU/%{pname}_%{version}.tar.gz
Source1: superlu_ug.pdf
Source2: README.SUSE
Source3: baselibs.conf
# PATCH-FEATURE-OPENSUSE superlu-5.2-make.patch : add compiler and build flags in make.inc
Patch0: superlu-5.2-make.patch
# PATCH-FIX-UPSTREAM superlu-4.3-include.patch : avoid implicit declaration warnings
Patch1: superlu-4.3-include.patch
# PATCH-FIX-UPSTREAM superlu-4.3-dont-opt-away.diff
@ -36,95 +68,170 @@ Patch2: superlu-4.3-dont-opt-away.diff
# PATCH-FIX-OPENSUSE superlu-5.2-remove-mc64ad.patch [bnc#796236]
# The Harwell Subroutine Library (HSL) routine mc64ad.c have been removed
# from the original sources for legal reasons. This patch disables the inclusion of
# this routine in the library which, however, remains fully functionnal
# this routine in the library which, however, remains fully functional
Patch3: superlu-5.2-remove-mc64ad.patch
Url: http://crd.lbl.gov/~xiaoye/SuperLU/
BuildRequires: blas-devel
BuildRequires: cmake >= 2.8.12
BuildRequires: fdupes
BuildRequires: gcc-fortran
URL: http://crd.lbl.gov/~xiaoye/SuperLU/
BuildRequires: tcsh
BuildRoot: %{_tmppath}/%{name}-%{version}-build
BuildRequires: fdupes
BuildRequires: cmake >= 2.8.12
%if %{without hpc}
BuildRequires: blas-devel
BuildRequires: gcc-fortran
%else
Requires: %{compiler_family}%{?c_f_ver}-compilers-hpc
BuildRequires: %{compiler_family}%{?c_f_ver}-compilers-hpc-macros-devel
BuildRequires: libopenblas%{?hpc_ext}-%{compiler_family}%{?c_f_ver}-hpc-devel
BuildRequires: suse-hpc >= 0.3
%hpc_requires
%hpc_requires_devel
%endif
%description
SuperLU is an algorithm that uses group theory to optimize LU
decomposition of sparse matrices.
%package -n %soname
Docu can be found in the %{name}-doc package or on http://www.netlib.org.
%package -n lib%{name}%{?_sover}
Summary: SuperLU matrix solver
Group: System/Libraries
%description -n %soname
%description -n lib%{name}%{?_sover}
SuperLU is an algorithm that uses group theory to optimize LU
decomposition of sparse matrices.
%package devel
Summary: Development files for %{name}
Summary: Headers and development files
Group: Development/Libraries/C and C++
Requires: %soname = %{version}
# The standalone superlu RPM has been eliminated, and the relevant
# files are now in superlu-devel
# The last standalone superlu RPM was was v3.0
Provides: superlu = %{version}
Obsoletes: superlu <= 3.0
Requires: lib%{name}%{?_sover} = %version
Recommends: %name-doc
%description devel
The %{name}-devel package contains libraries and header files for
developing applications that use %{name}.
SuperLU headers and libraries files needed for development
%package doc
Summary: Documentation for %name
Group: Documentation/Other
%description doc
Documentation (HTML/PDF) for SuperLU.
SuperLU is an algorithm that uses group theory to optimize LU
decomposition of sparse matrices.
%package examples
Summary: Examples for %name
Group: Documentation/Other
Recommends: %name-devel
%description examples
Example programs for SuperLU.
SuperLU is an algorithm that uses group theory to optimize LU
decomposition of sparse matrices.
%if %{with hpc}
%{hpc_master_package -l -L}
%{hpc_master_package devel}
%{hpc_master_package doc}
%{hpc_master_package examples}
%endif
%prep
%setup -q -n SuperLU_%{version}
%patch0 -p1
%patch1 -p1
%patch2 -p1
%patch3 -p1
# superlu_ug.pdf in %%doc
cp %SOURCE1 %SOURCE2 ./
# Create baselib.conf dynamically (non-HPC build only).
%if %{without hpc}
cat > %{_sourcedir}/baselibs.conf <<EOF
lib%{name}%{?_sover}
EOF
%endif
%build
# FIXME: Drop the -Denable_tests=OFF flag when MATGEN linking issues are resolved
%{?hpc_setup}
%if %{without hpc}
%cmake \
%else
module load openblas
%hpc_cmake \
%endif
-DCMAKE_BUILD_TYPE=Release -DUSE_XSDK_DEFAULTS='TRUE' -Denable_tests=OFF
make %{?_smp_mflags}
cd ..
%install
%cmake_install
#fix permissions
chmod 644 MATLAB/*
# remove all build examples
cd EXAMPLE
make clean
rm -rf *itersol*
rm -rf *itersol* .gitignore
cd ..
mv EXAMPLE examples
rm -f examples/.gitignore
cp FORTRAN/README README.fortran
%fdupes -s examples
%check
ln -s examples/ EXAMPLE
export LD_LIBRARY_PATH=%{buildroot}%{_libdir}
make testing
echo -ne "\nTest results\n"
for i in stest dtest ctest ztest; do
cat TESTING/$i.out
done
%if %{with hpc}
# TODO: is there any path to add for Matlab files?
%hpc_write_modules_files
#%Module1.0#####################################################################
%post -n %soname -p /sbin/ldconfig
proc ModulesHelp { } {
%postun -n %soname -p /sbin/ldconfig
puts stderr " "
puts stderr "This module loads the SuperLU library built with the %{compiler_family} compiler"
puts stderr "toolchain."
puts stderr " "
puts stderr "Note that this build of SuperLU leverages the OpenBLAS linear algebra libraries."
puts stderr "Consequently, openblas is loaded automatically with this module."
%files -n %soname
%defattr(-,root,root,-)
puts stderr "\nVersion %{version}\n"
}
module-whatis "Name: %{pname} built with %{compiler_family} compiler"
module-whatis "Version: %{version}"
module-whatis "Category: runtime library"
module-whatis "%{url}"
set version %{version}
depends-on openblas
prepend-path INCLUDE %{hpc_includedir}
prepend-path LD_LIBRARY_PATH %{hpc_libdir}
setenv %{hpc_PNAME %pname}_DIR %{hpc_prefix}
setenv %{hpc_PNAME %pname}_INC %{hpc_includedir}
setenv %{hpc_PNAME %pname}_LIB %{hpc_libdir}
EOF
%endif
%if %{without hpc}
%post -n lib%{name}%{?_sover} -p /sbin/ldconfig
%postun -n lib%{name}%{?_sover} -p /sbin/ldconfig
%endif
%files -n lib%{name}%{?_sover}
%doc README MATLAB README.SUSE
%{_libdir}/*.so.*
%{?hpc_dirs}
%{p_libdir}/*.so.*
%files devel
%defattr(-,root,root,-)
%doc DOC/html examples README.fortran superlu_ug.pdf
%{_includedir}/*.h
%{_libdir}/*.so
%doc README.fortran
%{?hpc_modules_files}
%{p_includedir}/%{!?with_hpc:*}
%{p_libdir}/*.so
%files doc
%doc DOC/html superlu_ug.pdf
%files examples
%doc examples
%changelog

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superlu_5.2.1-bsd.tar.gz
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size 2540521

3
superlu_5.2.1.tar.gz Normal file
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oid sha256:28fb66d6107ee66248d5cf508c79de03d0621852a0ddeba7301801d3d859f463
size 2560875