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Accepting request 690979 from devel:languages:perl:autoupdate

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automatic update

OBS-URL: https://build.opensuse.org/request/show/690979
OBS-URL: https://build.opensuse.org/package/show/devel:languages:perl/perl-BioPerl?expand=0&rev=7
This commit is contained in:
Stephan Kulow
2019-04-03 11:33:39 +00:00
committed by Git OBS Bridge
parent f913e351ae
commit 76b00da068
4 changed files with 80 additions and 64 deletions
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3
BioPerl-1.007002.tar.gz
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@@ -1,3 +0,0 @@
version https://git-lfs.github.com/spec/v1
oid sha256:17aa3aaab2f381bbcaffdc370002eaf28f2c341b538068d6586b2276a76464a1
size 12362741

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BioPerl-1.7.5.tar.gz Normal file
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@@ -0,0 +1,3 @@
version https://git-lfs.github.com/spec/v1
oid sha256:4a96472004e35e11eafd1fa3b3966f1d18622de3afde3e2fa6765a2dbedb3a0a
size 7512326

6
perl-BioPerl.changes
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@@ -1,3 +1,9 @@
-------------------------------------------------------------------
Wed Apr 3 06:45:03 UTC 2019 - Stephan Kulow <coolo@suse.com>
- updated to 1.7.5
see /usr/share/doc/packages/perl-BioPerl/Changes
------------------------------------------------------------------- -------------------------------------------------------------------
Thu Sep 27 16:11:06 UTC 2018 - Christian Wittmer <chris@computersalat.de> Thu Sep 27 16:11:06 UTC 2018 - Christian Wittmer <chris@computersalat.de>

132
perl-BioPerl.spec
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@@ -1,7 +1,7 @@
# #
# spec file for package perl-BioPerl # spec file for package perl-BioPerl
# #
# Copyright (c) 2018 SUSE LINUX GmbH, Nuernberg, Germany. # Copyright (c) 2019 SUSE LINUX GmbH, Nuernberg, Germany.
# #
# All modifications and additions to the file contributed by third parties # All modifications and additions to the file contributed by third parties
# remain the property of their copyright owners, unless otherwise agreed # remain the property of their copyright owners, unless otherwise agreed
@@ -17,65 +17,81 @@
Name: perl-BioPerl Name: perl-BioPerl
Version: 1.007002 Version: 1.7.5
Release: 0 Release: 0
%define cpan_name BioPerl %define cpan_name BioPerl
Summary: Perl Modules for Biology Summary: Perl modules for biology
License: GPL-2.0-or-later OR Artistic-1.0 License: Artistic-1.0 OR GPL-1.0-or-later
Group: Development/Libraries/Perl Group: Development/Libraries/Perl
Url: http://search.cpan.org/dist/BioPerl/ Url: https://metacpan.org/release/%{cpan_name}
Source0: https://cpan.metacpan.org/authors/id/C/CJ/CJFIELDS/%{cpan_name}-%{version}.tar.gz Source0: https://cpan.metacpan.org/authors/id/C/CD/CDRAUG/%{cpan_name}-%{version}.tar.gz
Source1: cpanspec.yml Source1: cpanspec.yml
BuildArch: noarch BuildArch: noarch
BuildRoot: %{_tmppath}/%{name}-%{version}-build BuildRoot: %{_tmppath}/%{name}-%{version}-build
BuildRequires: perl BuildRequires: perl
BuildRequires: perl-macros BuildRequires: perl-macros
BuildRequires: perl(CPAN) >= 1.81 BuildRequires: perl(DBI)
BuildRequires: perl(Data::Stag) >= 0.11 BuildRequires: perl(Data::Stag)
BuildRequires: perl(ExtUtils::Manifest) >= 1.52 BuildRequires: perl(Error)
BuildRequires: perl(GD)
BuildRequires: perl(Graph::Directed)
BuildRequires: perl(HTTP::Request::Common)
BuildRequires: perl(HTTP::Response)
BuildRequires: perl(IO::Scalar)
BuildRequires: perl(IO::String) BuildRequires: perl(IO::String)
BuildRequires: perl(Module::Build) >= 0.420000 BuildRequires: perl(IPC::Run)
BuildRequires: perl(Test::Harness) >= 2.62 BuildRequires: perl(LWP::UserAgent)
BuildRequires: perl(List::MoreUtils)
BuildRequires: perl(Module::Build)
BuildRequires: perl(Set::Scalar)
BuildRequires: perl(Test::Memory::Cycle)
BuildRequires: perl(Test::Most) BuildRequires: perl(Test::Most)
BuildRequires: perl(URI::Escape) BuildRequires: perl(Test::RequiresInternet)
Requires: perl(Data::Stag) >= 0.11 BuildRequires: perl(Test::Weaken)
Requires: perl(ExtUtils::Manifest) >= 1.52 BuildRequires: perl(URI)
BuildRequires: perl(XML::DOM)
BuildRequires: perl(XML::DOM::XPath)
BuildRequires: perl(XML::LibXML)
BuildRequires: perl(XML::LibXML::Reader)
BuildRequires: perl(XML::Parser::PerlSAX)
BuildRequires: perl(XML::SAX)
BuildRequires: perl(XML::SAX::Base)
BuildRequires: perl(XML::SAX::Writer)
BuildRequires: perl(XML::Twig)
BuildRequires: perl(XML::Writer)
BuildRequires: perl(YAML)
BuildRequires: perl(parent)
BuildRequires: perl(version)
Requires: perl(DBI)
Requires: perl(Data::Stag)
Requires: perl(Error)
Requires: perl(GD)
Requires: perl(Graph::Directed)
Requires: perl(HTTP::Request::Common)
Requires: perl(HTTP::Response)
Requires: perl(IO::Scalar)
Requires: perl(IO::String) Requires: perl(IO::String)
Recommends: perl(Algorithm::Munkres) Requires: perl(IPC::Run)
Recommends: perl(Array::Compare) Requires: perl(LWP::UserAgent)
Recommends: perl(Bio::Phylo) Requires: perl(List::MoreUtils)
Recommends: perl(CGI) Requires: perl(Module::Build)
Recommends: perl(Clone) Requires: perl(Set::Scalar)
Recommends: perl(Convert::Binary::C) Requires: perl(Test::Most)
Recommends: perl(Error) Requires: perl(Test::RequiresInternet)
Recommends: perl(GD) Requires: perl(URI)
Recommends: perl(Graph) >= 0.5 Requires: perl(XML::DOM)
Recommends: perl(GraphViz) Requires: perl(XML::DOM::XPath)
Recommends: perl(HTML::Entities) Requires: perl(XML::LibXML)
Recommends: perl(HTML::HeadParser) >= 3 Requires: perl(XML::LibXML::Reader)
Recommends: perl(HTML::TableExtract) Requires: perl(XML::Parser::PerlSAX)
Recommends: perl(HTTP::Request::Common) Requires: perl(XML::SAX)
Recommends: perl(Inline::C) >= 0.67 Requires: perl(XML::SAX::Base)
Recommends: perl(IO::Scalar) Requires: perl(XML::SAX::Writer)
Recommends: perl(List::MoreUtils) Requires: perl(XML::Twig)
Recommends: perl(LWP::UserAgent) Requires: perl(XML::Writer)
Recommends: perl(PostScript::TextBlock) Requires: perl(YAML)
Recommends: perl(Set::Scalar) Requires: perl(parent)
Recommends: perl(Sort::Naturally) Requires: perl(version)
Recommends: perl(Spreadsheet::ParseExcel)
Recommends: perl(SVG) >= 2.26
Recommends: perl(SVG::Graph) >= 0.01
Recommends: perl(XML::DOM)
Recommends: perl(XML::DOM::XPath)
Recommends: perl(XML::LibXML)
Recommends: perl(XML::Parser)
Recommends: perl(XML::Parser::PerlSAX)
Recommends: perl(XML::SAX) >= 0.15
Recommends: perl(XML::SAX::Writer)
Recommends: perl(XML::Simple)
Recommends: perl(XML::Twig)
Recommends: perl(XML::Writer) >= 0.4
Recommends: perl(YAML)
%{perl_requires} %{perl_requires}
%description %description
@@ -106,28 +122,22 @@ and contribute your own if possible.
%prep %prep
%setup -q -n %{cpan_name}-%{version} %setup -q -n %{cpan_name}-%{version}
find . -type f ! -name \*.pl -print0 | xargs -0 chmod 644 find . -type f ! -name \*.pl -print0 | xargs -0 chmod 644
# fix for boo#1089992
for i in $(grep -R "/usr/local/bin/perl" * | awk -F':' '{print $1}'); do
perl -p -i -e 's|#!/usr/local/bin/perl|#!/usr/bin/perl|' "${i}"
done
# rpmlint
perl -p -i -e 's|\r\n|\n|' ./ide/bioperl-mode/etc/images/bpmode-tool-dis.xpm
perl -p -i -e 's|\r\n|\n|' ./ide/bioperl-mode/etc/images/bpmode-tool.xpm
%build %build
%{__perl} Build.PL installdirs=vendor perl Makefile.PL INSTALLDIRS=vendor
./Build build flags=%{?_smp_mflags} make %{?_smp_mflags}
%check %check
./Build test make test
%install %install
./Build install destdir=%{buildroot} create_packlist=0 %perl_make_install
%perl_process_packlist
%perl_gen_filelist %perl_gen_filelist
%files -f %{name}.files %files -f %{name}.files
%defattr(-,root,root,755) %defattr(-,root,root,755)
%doc AUTHORS Bio BUGS Changes deobfuscator DEPENDENCIES DEPRECATED examples ide maintenance models README.md scripts travis_scripts %doc AUTHORS Changes examples HACKING.md README.md
%license LICENSE %license LICENSE
%changelog %changelog