forked from pool/python-astropy
c5409cf695
39 Commits
Author | SHA256 | Message | Date | |
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Dominique Leuenberger
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c5409cf695 |
Accepting request 854363 from devel:languages:python:numeric
OBS-URL: https://build.opensuse.org/request/show/854363 OBS-URL: https://build.opensuse.org/package/show/openSUSE:Factory/python-astropy?expand=0&rev=17 |
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a4a027a65c |
Accepting request 854362 from home:bnavigator:branches:devel:languages:python:numeric
- OBS thinks the test flavor creates a build-cycle. Reintroduce the pseudo package suffix. OBS-URL: https://build.opensuse.org/request/show/854362 OBS-URL: https://build.opensuse.org/package/show/devel:languages:python:numeric/python-astropy?expand=0&rev=40 |
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Dominique Leuenberger
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1e45b94f06 |
Accepting request 851661 from devel:languages:python:numeric
OBS-URL: https://build.opensuse.org/request/show/851661 OBS-URL: https://build.opensuse.org/package/show/openSUSE:Factory/python-astropy?expand=0&rev=16 |
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fd7e707d74 |
Accepting request 851660 from home:bnavigator:branches:devel:languages:python:numeric
- Update to Version 4.2 Astropy 4.2 is a major release that adds new funcionality since the 4.1 release. In particular, this release includes: * Planck 2018 is accepted and now the default cosmology * Time performance improvements * Removed ERFA module In addition to these major changes, Astropy v4.2 includes smaller improvements and bug fixes and significant cleanup, which are described in the Full Changelog. By the numbers: * 183 issues have been closed since v4.1 * 105 pull requests have been merged since v4.1 * 63 distinct people have contributed code - Bump requirements versions - Drop astropy-pr10329-unbundle-erfa_4.1.patch merged upstream OBS-URL: https://build.opensuse.org/request/show/851660 OBS-URL: https://build.opensuse.org/package/show/devel:languages:python:numeric/python-astropy?expand=0&rev=38 |
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Dominique Leuenberger
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5054d3db26 |
Accepting request 843596 from devel:languages:python:numeric
OBS-URL: https://build.opensuse.org/request/show/843596 OBS-URL: https://build.opensuse.org/package/show/openSUSE:Factory/python-astropy?expand=0&rev=15 |
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18c04387c7 |
Accepting request 843474 from home:bnavigator:branches:devel:languages:python:numeric
- Update to 4.1 Astropy 4.1 is a major release that contains bug fixes and new features since the 4.0.x series of releases. In particular, this release includes: * A new SpectralCoord class for representing and transforming spectral quantities * Support for writing Dask arrays to FITS files * Added True Equator Mean Equinox (TEME) frame for satellite two- line ephemeris data * Support for in-place setting of array-valued SkyCoord and frame objects * Change in the definition of equality comparison for coordinate classes * Support use of SkyCoord in table vstack, dstack, and insert_row * Support for table cross-match join with SkyCoord or N-d columns * Support for custom attributes in Table subclasses * Added a new Time subformat unix_tai * Added support for the -TAB convention in FITS WCS * Support for replacing submodels in CompoundModel * Support for units on otherwise unitless models via the Model.coerce_units method. * Support for ASDF serialization of models In addition to these major changes, Astropy v4.0 includes a large number of smaller improvements and bug fixes, which are described in the Full Changelog. By the numbers: * 381 issues have been closed since v4.0 * 511 pull requests have been merged since v4.0 * 66 distinct people have contributed code to this release, 23 of which are first time contributors to Astropy - Drop astropy-pr10545-remove-newline-3d_cd_hdr.patch * merged upstream * gh#astropy/astropy#10545 - Add astropy-pr10329-unbundle-erfa_4.1.patch * Remove bundled _erfa but use system package pyerfa instead * gh#astropy/astropy#10329 - enable optional pytest-xdist - Update to 4.0.3 * astropy.table Fixed a small bug where initializing an empty `Column` with a structured dtype with a length and a shape failed to give the requested dtype. [#10819] * Fixed installation of the source distribution with pip<19. [#10837, #10852] OBS-URL: https://build.opensuse.org/request/show/843474 OBS-URL: https://build.opensuse.org/package/show/devel:languages:python:numeric/python-astropy?expand=0&rev=36 |
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Dominique Leuenberger
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e13b166b90 |
Accepting request 840967 from devel:languages:python:numeric
OBS-URL: https://build.opensuse.org/request/show/840967 OBS-URL: https://build.opensuse.org/package/show/openSUSE:Factory/python-astropy?expand=0&rev=14 |
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Tomáš Chvátal
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f26bda05c6 |
Accepting request 840965 from home:bnavigator:branches:devel:languages:python:numeric
- Update to 4.0.2 New Features * astropy.utils astropy.utils.data.download_file now supports FTPS/FTP over TLS. [#9964] astropy.utils.data now uses a lock-free mechanism for caching. This new mechanism uses a new cache layout and so ignores caches created using earlier mechanisms (which were causing lockups on clusters). The two cache formats can coexist but do not share any files. [#10437, #10683] astropy.utils.data now ignores the config item astropy.utils.data.conf.download_cache_lock_attempts since no locking is done. [#10437, #10683] astropy.utils.data.download_file and related functions now interpret the parameter or config file setting timeout=0 to mean they should make no attempt to download files. [#10437, #10683] astropy.utils.import_file_to_cache now accepts a keyword-only argument replace, defaulting to True, to determine whether it should replace existing files in the cache, in a way as close to atomic as possible. [#10437, #10683] astropy.utils.data.download_file and related functions now treat http://example.com and http://example.com/ as equivalent. [#10631] * astropy.wcs The new auxiliary WCS parameters added in WCSLIB 7.1 are now exposed as the aux attribute of Wcsprm. [#10333] Updated bundled version of WCSLIB to v7.3. [#10433] Bug fixes * astropy.config Added an extra fallback to os.expanduser('~') when trying to find the user home directory. [#10570] * astropy.constants Corrected definition of parsec to 648 000 / pi AU following IAU 2015 B2 [#10569] * astropy.convolution Fixed a bug where a float-typed integers in the argument x_range of astropy.convolution.utils.discretize_oversample_1D (and the 2D version as well) fails because it uses numpy.linspace, which requires an int. [#10696] * astropy.coordinates Ensure that for size-1 array SkyCoord and coordinate frames the attributes also properly become scalars when indexed with 0. [#10113] Fixed a bug where SkyCoord.separation() and SkyCoord.separation_3d were not accepting a frame object. [#10332] Ensure that the lon values in SkyOffsetFrame are wrapped correctly at 180 degree regardless of how the underlying data is represented. [#10163] Fixed an error in the obliquity of the ecliptic when transforming to/from the *TrueEcliptic coordinate frames. The error would primarily result in an inaccuracy in the ecliptic latitude on the order of arcseconds. [#10129] Fixed an error in the computation of the location of solar system bodies where the Earth location of the observer was ignored during the correction for light travel time. [#10292] Ensure that coordinates with proper motion that are transformed to other coordinate frames still can be represented properly. [#10276] Improve the error message given when trying to get a cartesian representation for coordinates that have both proper motion and radial velocity, but no distance. [#10276] Fixed an error where SkyCoord.apply_space_motion would return incorrect results when no distance is set and proper motion is high. [#10296] Make the parsing of angles thread-safe so that Angle can be used in Python multithreading. [#10556] Fixed reporting of EarthLocation.info which previously raised an exception. [#10592] * astropy.io.ascii Fixed a bug with the C fast_reader not correctly parsing newlines when delimiter was also set to \n or \r; ensured consistent handling of input strings without newline characters. [#9929] * astropy.io.fits Fix integer formats of TFORMn=Iw columns in ASCII tables to correctly read values exceeding int32 - setting int16, int32 or int64 according to w. [#9901] Fix unclosed memory-mapped FITS files in FITSDiff when difference found. [#10159] Fix crash when reading an invalid table file. [#10171] Fix duplication issue when setting a keyword ending with space. [#10482] Fix ResourceWarning with fits.writeto and pathlib.Path object. [#10599] Fix repr for commentary cards and strip spaces for commentary keywords. [#10640] Fix compilation of cfitsio with Xcode 12. [#10772] Fix handling of 1-dimensional arrays with a single element in BinTableHDU [#10768] * astropy.io.misc Fix id URL in baseframe-1.0.0 ASDF schema. [#10223] Write keys to ASDF only if the value is present, to account for a change in behavior in asdf 2.8. [#10674] * astropy.io.registry Fix Table.(read|write).help when reader or writer has no docstring. [#10460] * astropy.io.votable Fixed parsing failure of VOTable with no fields. When detecting a non-empty table with no fields, the following warning/ exception is issued: E25 "No FIELDs are defined; DATA section will be ignored." [#10192] * astropy.modeling Fixed a problem with mapping input_units and return_units of a CompoundModel to the units of the constituent models. [#10158] Removed hard-coded names of inputs and outputs. [#10174] Fixed a problem where slicing a CompoundModel by name will crash if there fix_inputs operators are present. [#10224] Removed a limitation of fitting of data with units with compound models without units when the expression involves operators other than addition and subtraction. [#10415] Fixed a problem with fitting Linear1D and Planar2D in model sets. [#10623] Fixed reported module name of math_functions model classes. [#10694] Fixed reported module name of tabular model classes. [#10709] Do not create new math_functions models for ufuncs that are only aliases (divide and mod). [#10697] Fix calculation of the Moffat2D derivative with respect to gamma. [#10784] * astropy.stats Fixed an API regression where SigmaClip.__call__ would convert masked elements to nan and upcast the dtype to float64 in its output MaskedArray when using the axis parameter along with the defaults masked=True and copy=True. [#10610] Fixed an issue where fully masked MaskedArray input to sigma_clipped_stats gave incorrect results. [#10099] Fixed an issue where sigma_clip and SigmaClip.__call__ would return a masked array instead of a ndarray when masked=False and the input was a full-masked MaskedArray. [#10099] Fixed bug with funcs.poisson_conf_interval where an integer for N with interval='kraft-burrows-nousek' would throw an error with mpmath backend. [#10427] Fixed bug in funcs.poisson_conf_interval with interval='kraft- burrows-nousek' where certain combinations of source and background count numbers led to ValueError due to the choice of starting value for numerical optimization. [#10618] * astropy.table Fixed a bug when writing a table with mixin columns to FITS, ECSV or HDF5. If one of the data attributes of the mixin (e.g. skycoord.ra) had the same name as one of the table column names (ra), the column (ra) would be dropped when reading the table back. [#10222] Fixed a bug when sorting an indexed table on the indexed column after first sorting on another column. [#10103] Fixed a bug in table argsort when called with reverse=True for an indexed table. [#10103] Fixed a performance regression introduced in #9048 when initializing a table from Python lists. Also fixed incorrect behavior (for data types other than float) when those lists contain np.ma.masked elements to indicate masked data. [#10636] Avoid modifying .meta when serializing columns to FITS. [#10485] Avoid crash when reading a FITS table that contains mixin info and PyYAML is missing. [#10485] * astropy.time Ensure that for size-1 array Time, the location also properly becomes a scalar when indexed with 0. [#10113] * astropy.units Refined test_parallax to resolve difference between 2012 and 2015 definitions. [#10569] * astropy.utils The default IERS server has been updated to use the FTPS server hosted by CDDIS. [#9964] Fixed memory allocation on 64-bit systems within xml.iterparse [#10076] Fix case where None could be used in a numerical computation. [#10126] * astropy.visualization Fixed a bug where the ImageNormalize clip keyword was ignored when used with calling the object on data. [#10098] Fixed a bug where axes.xlabel/axes.ylabel where not correctly set nor returned on an EllipticalFrame class WCSAxes plot. [#10446] * astropy.wcs Handled WCS 360 -> 0 deg crossover in fit_wcs_from_points [#10155] Do not issue DATREF warning when MJDREF has default value. [#10440] Fixed a bug due to which naxis argument was ignored if header was supplied during the initialization of a WCS object. [#10532] Other Changes and Additions * Improved the speed of sorting a large Table on a single column by a factor of around 5. [#10103] * Ensure that astropy can be used inside Application bundles built with pyinstaller. [#8795] * Updated the bundled CFITSIO library to 3.49. See cextern/ cfitsio/docs/changes.txt for additional information. [#10256, #10665] * extract_array raises a ValueError if the data type of the input array is inconsistent with the fill_value. [#10602] - Drop merged PR patches * astropy-pr10433-wcslib73-tests.patch gh#astropy/astropy#10433 * astropy-pr10440-wcs-datfix.patch gh#astropy/astropy#10440 - Skip test_compound_fitting_with_units gh#astropy/astropy#10675 OBS-URL: https://build.opensuse.org/request/show/840965 OBS-URL: https://build.opensuse.org/package/show/devel:languages:python:numeric/python-astropy?expand=0&rev=34 |
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Dominique Leuenberger
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36d985d609 |
Accepting request 821553 from devel:languages:python:numeric
OBS-URL: https://build.opensuse.org/request/show/821553 OBS-URL: https://build.opensuse.org/package/show/openSUSE:Factory/python-astropy?expand=0&rev=13 |
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Tomáš Chvátal
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82ad95d973 |
Accepting request 821523 from home:bnavigator:branches:devel:languages:python:numeric
:test flavor is currently failing but undetected! - actually detect unit test failures with sys.exit(astropy.tests()) - do not fail on DeprecationWarnings - support updated system lib wcslib 7.3 with astropy-pr10433-wcslib73-tests.patch gh#astropy/astropy#10433 astropy-pr10440-wcs-datfix.patch gh#astropy/astropy#10440 - clean up blank lines after pytest report and prevent possible failure of tests depending on test order astropy-pr10545-remove-newline-3d_cd_hdr.patch gh#astropy/astropy#10545 OBS-URL: https://build.opensuse.org/request/show/821523 OBS-URL: https://build.opensuse.org/package/show/devel:languages:python:numeric/python-astropy?expand=0&rev=32 |
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Dominique Leuenberger
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6baf93ab4e |
Accepting request 819886 from devel:languages:python:numeric
OBS-URL: https://build.opensuse.org/request/show/819886 OBS-URL: https://build.opensuse.org/package/show/openSUSE:Factory/python-astropy?expand=0&rev=12 |
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Tomáš Chvátal
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a2a197c8df |
Accepting request 819841 from home:bnavigator:branches:devel:languages:python:numeric
- Switch from pytest macro back to astropy.test() This avoids compiling a second time inplace and obsoletes the necessary deprecation warningsfilters. New deprecation warnings from numpy 1.19 started to fail the test multibuild again. Can now drop astropy-openSUSE-ignore-warnings.patch - Fix update-alternatives warnings by expanding the loop early fix multibuild setup OBS-URL: https://build.opensuse.org/request/show/819841 OBS-URL: https://build.opensuse.org/package/show/devel:languages:python:numeric/python-astropy?expand=0&rev=30 |
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Dominique Leuenberger
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22e55d861d |
Accepting request 818935 from devel:languages:python:numeric
OBS-URL: https://build.opensuse.org/request/show/818935 OBS-URL: https://build.opensuse.org/package/show/openSUSE:Factory/python-astropy?expand=0&rev=11 |
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Tomáš Chvátal
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488994a6b4 |
Accepting request 818848 from home:bnavigator:branches:devel:languages:python:numeric
- Fix conftest collection error: import local source dir for tests - Remove ignore pytest deprecation fixed by pytest-doctestplus >= 0.6 - Ignore leap second expiry and dubious year warnings for reproducible builds: gh#astropy/astropy#10228 astropy-openSUSE-ignore-warnings.patch OBS-URL: https://build.opensuse.org/request/show/818848 OBS-URL: https://build.opensuse.org/package/show/devel:languages:python:numeric/python-astropy?expand=0&rev=28 |
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Dominique Leuenberger
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0ed9640a55 |
Accepting request 811018 from devel:languages:python:numeric
- Switch to multibuild to avoid cycle with python-asdf package - %python3_only -> %python_alternative OBS-URL: https://build.opensuse.org/request/show/811018 OBS-URL: https://build.opensuse.org/package/show/openSUSE:Factory/python-astropy?expand=0&rev=10 |
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Tomáš Chvátal
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00235161ca |
- Switch to multibuild to avoid cycle with python-asdf package
OBS-URL: https://build.opensuse.org/package/show/devel:languages:python:numeric/python-astropy?expand=0&rev=26 |
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Tomáš Chvátal
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c80aed9cfa |
Accepting request 809557 from home:pgajdos:python
submit OBS-URL: https://build.opensuse.org/request/show/809557 OBS-URL: https://build.opensuse.org/package/show/devel:languages:python:numeric/python-astropy?expand=0&rev=25 |
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Dominique Leuenberger
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9f3224c25d |
Accepting request 795889 from devel:languages:python:numeric
OBS-URL: https://build.opensuse.org/request/show/795889 OBS-URL: https://build.opensuse.org/package/show/openSUSE:Factory/python-astropy?expand=0&rev=9 |
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Todd R
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d9b1c61d80 |
Accepting request 795557 from home:bnavigator:branches:devel:languages:python:numeric
- Update to 4.0.1.post1 * astropy.config [gh#astropy/astropy#9975] Fixed a bug where importing a development version of a package that uses ``astropy`` configuration system can result in a ``~/.astropy/config/package..cfg`` file. * astropy.coordinates [gh#astropy/astropy#9815] Fixed a bug where a vestigal trace of a frame class could persist in the transformation graph even after the removal of all transformations involving that frame class. [gh#astropy/astropy#9815] Fixed a bug with ``TransformGraph.remove_transform()`` when the "from" and "to" frame classes are not explicitly specified. [gh#astropy/astropy#9900] Read-only longitudes can now be passed in to ``EarthLocation`` even if they include angles outside of the range of -180 to 180 degrees. [gh#astropy/astropy#9980] ```SkyCoord.radial_velocity_correction``` no longer raises an Exception when space motion information is present on the SkyCoord. * astropy.io [gh#astropy/astropy#9866] Fixed a bug that prevented the unified I/O infrastructure from working with datasets that are represented by directories rather than files. * astropy.io.ascii [gh#astropy/astropy#9918] Fixed a bug in the ``fast_reader`` C parsers incorrectly returning entries of isolated positive/negative signs as ``float`` instead of ``str``. [gh#astropy/astropy#9923] Fixed a segmentation fault in the ``fast_reader`` C parsers when parsing an invalid file with ``guess=True`` and the file contains inconsistent column numbers in combination with a quoted field; e.g., ``"1 2\n 3 4 '5'"``. [gh#astropy/astropy#9933] Magnitude, decibel, and dex can now be stored in ``ecsv`` files. * astropy.io.misc [gh#astropy/astropy#9933] Magnitude, decibel, and dex can now be stored in ``hdf5`` files. [gh#astropy/astropy#9956, gh#astropy/astropy#9961] Fixed serialization of polynomial models to include non default values of domain and window values. [gh#astropy/astropy#9950] Fixed a bug which affected overwriting tables within ``hdf5`` files. Overwriting an existing path with associated column meta data now also overwrites the meta data associated with the table. [gh#astropy/astropy#9983] Fixed serialization of Time objects with location under time-1.0.0 ASDF schema. * astropy.io.fits [gh#astropy/astropy#9711, gh#astropy/astropy#9934] Fix regression with ``GroupsHDU`` which needs to modify the header to handle invalid headers, and fix accesing ``.data`` for empty HDU. [gh#astropy/astropy#9711] Fix ``fitsdiff`` when its arguments are directories that contain other directories. [gh#astropy/astropy#9958] Fix writing noncontiguous data to a compressed HDU. [gh#astropy/astropy#9978] Added verification of ``disp`` (``TDISP``) keyword to ``fits.Column`` and extended tests for ``TFORM`` and ``TDISP`` validation. [gh#astropy/astropy#10012] Fix checksum verification to process all HDUs instead of only the first one because of the lazy loading feature. [gh#astropy/astropy#10030] Allow passing ``output_verify`` to ``.close`` when using the context manager. [gh#astropy/astropy#10041] Prevent instantiation of ``PrimaryHDU`` and ``ImageHDU`` with a scalar. [gh#astropy/astropy#10069] Fix column access by attribute with FITS_rec: columns with scaling or columns from ASCII tables where not properly converted when accessed by attribute name. * astropy.io.misc [gh#astropy/astropy#9933] Magnitude, decibel, and dex can now be stored in ``hdf5`` files. [gh#astropy/astropy#9956, gh#astropy/astropy#9961] Fixed serialization of polynomial models to include non default values of domain and window values. [gh#astropy/astropy#9950] Fixed a bug which affected overwriting tables within ``hdf5`` files. Overwriting an existing path with associated column meta data now also overwrites the meta data associated with the table. [gh#astropy/astropy#9983] Fixed serialization of Time objects with location under time-1.0.0 ASDF schema. * astropy.modeling [gh#astropy/astropy#9987] Fixed a bug in setting default values of parameters of orthonormal polynomials when constructing a model set. * astropy.table [gh#astropy/astropy#9839] Fixed bug in ``Table.reverse`` for tables that contain non-mutable mixin columns (like ``SkyCoord``) for which in-place item update is not allowed. [gh#astropy/astropy#9933] Tables containing Magnitude, decibel, and dex columns can now be saved to ``ecsv`` files. [gh#astropy/astropy#10027] Fixed bug where adding or inserting a row fails on a table with an index defined on a column that is not the first one. [gh#astropy/astropy#10068] Ensured that ``table.show_in_browser`` also worked for mixin columns like ``Time`` and ``SkyCoord``. * astropy.time [gh#astropy/astropy#9679] Fix inaccuracy when converting between TimeDelta and datetime.timedelta. [gh#astropy/astropy#9812] Fixed exception when changing ``format`` in the case when ``out_subfmt`` is defined and is incompatible with the new format. [gh#astropy/astropy#9812] Fixed exceptions in ``Time.to_value()``: when supplying any ``subfmt`` argument for string-based formats like 'iso', and for ``subfmt='long'`` for the formats 'byear', 'jyear', and 'decimalyear'. [gh#astropy/astropy#9969] Fixed bug where the location attribute was lost when creating a new ``Time`` object from an existing ``Time`` or list of ``Time`` objects. [gh#astropy/astropy#10034] Fixed a bug where an exception occurred when creating a ``Time`` object if the ``val1`` argument was a regular double and the ``val2`` argument was a ``longdouble``. * astropy.timeseries [gh#astropy/astropy#10013] Fixed issue with reference time for the ``transit_time`` parameter returned by the ``BoxLeastSquares`` periodogram. Now, the ``transit_time`` will be within the range of the input data and arbitrary time offsets/zero points no longer affect results. * astropy.units [gh#astropy/astropy#9948] Fix for ``quantity_input`` annotation raising an exception on iterable types that don't define a general ``__contains__`` for checking if ``None`` is contained (e.g. Enum as of python3.8), by instead checking for instance of Sequence. [gh#astropy/astropy#10066] Fix for ``u.Quantity`` not taking into account ``ndmin`` if constructed from another ``u.Quantity`` instance with different but convertible unit * astropy.utils [gh#astropy/astropy#9981] Fixed ``deprecated_renamed_argument`` not passing in user value to deprecated keyword when the keyword has no new name. [gh#astropy/astropy#9985] Fixed ``deprecated_renamed_argument`` not issuing a deprecation warning when deprecated keyword without new name is passed in as positional argument. [gh#astropy/astropy#10007] Fixed detection of read-only filesystems in the caching code. * astropy.visualization [gh#astropy/astropy#9848] Fixed bug from matplotlib >=3.1 where an empty Quantity array is sent for unit conversion as an empty list. [gh#astropy/astropy#9913] Fix bug in ``ZScaleInterval`` to return the array minimum and maximum when there are less then ``min_npixels`` in the input array. [gh#astropy/astropy#8004, gh#astropy/astropy#9991] Fix a bug in simplifying axis labels that affected non-rectangular frames. * Increase minimum asdf version to 2.5.2. [gh#astropy/astropy#9996, gh#astropy/astropy#9819] * Updated wcslib to v7.2. [gh#astropy/astropy#10021] - updated test requirements and recommends - run pytest directly OBS-URL: https://build.opensuse.org/request/show/795557 OBS-URL: https://build.opensuse.org/package/show/devel:languages:python:numeric/python-astropy?expand=0&rev=23 |
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Dominique Leuenberger
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cc2a6e0ad1 |
Accepting request 761637 from devel:languages:python:numeric
- Require erfa >= 1.7 because of https://github.com/astropy/astropy/issues/9654 - Update to 4.0 + New Features > astropy.config * The config and cache directories and the name of the config file are now customizable. This allows affiliated packages to put their configuration files in locations other than ``CONFIG_DIR/.astropy/``. > astropy.constants * The version of constants can be specified via ScienceState in a way that ``constants`` and ``units`` will be consistent. * Default constants now use CODATA 2018 and IAU 2015 definitions. * Constants can be pickled and unpickled. > astropy.convolution * Fixed a bug where having a kernel defined using unitless astropy quantity objects would result in a crash > astropy.coordinates * Changed ``coordinates.solar_system_ephemeris`` to also accept local files as input. The ephemeris can now be selected by either keyword (e.g. 'jpl', 'de430'), URL or file path. * Added a ``cylindrical`` property to ``SkyCoord`` for shorthand access to a ``CylindricalRepresentation`` of the coordinate, as is already available for other common representations. * The default parameters for the ``Galactocentric`` frame are now controlled by a ``ScienceState`` subclass, ``galactocentric_frame_defaults``. New parameter sets will be added to this object periodically to keep up with ever-improved measurements of the solar position and motion. * Coordinate frame classes can now have multiple aliases by assigning a list of aliases to the class variable ``name``. Any of the aliases can be used for attribute-style access or as the target of ``tranform_to()`` calls. * Passing a NaN to ``Distance`` no longer raises a warning. > astropy.cosmology * The pre-publication Planck 2018 cosmological parameters are included as the ``Planck2018_arXiv_v2`` object. Please note that the values are preliminary, and when the paper is accepted a final version will be included as ``Planck18``. > astropy.io.ascii * Removed incorrect warnings on ``Overflow`` when reading in ``FloatType`` 0.0 with ``use_fast_converter``; synchronised ``IntType`` ``Overflow`` warning messages. > astropy.io.misc * Eliminate deprecated compatibility mode when writing ``Table`` metadata to HDF5 format. * Add support for orthogonal polynomial models to ASDF. > astropy.io.fits * Changed the ``fitscheck`` and ``fitsdiff`` script to use the ``argparse`` module instead of ``optparse``. * Allow writing of ``Table`` objects with ``Time`` columns that are also table indices to FITS files. > astropy.io.votable * Support VOTable version 1.4. The main addition is the new element, TIMESYS, which allows defining of metadata for temporal coordinates much like COOSYS defines metadata for celestial coordinates. > astropy.logger * Added a configuration option to specify the text encoding of the log file, with the default behavior being the platform-preferred encoding. > astropy.modeling * Major rework of modeling internals. `See modeling documentation for details. <https://docs.astropy.org/en/v4.0.x/modeling/changes_for_4.html>`_ . * Add ``Tabular1D.inverse``. * ``Model.rename`` was changed to add the ability to rename ``Model.inputs`` and ``Model.outputs``. * New function ``fix_inputs`` to generate new models from others by fixing specific inputs variable values to constants. * ``inputs`` and ``outputs`` are now model instance attributes, and ``n_inputs`` and ``n_outputs`` are class attributes. Backwards compatible default values of ``inputs`` and ``outputs`` are generated. ``Model.inputs`` and ``Model.outputs`` are now settable which allows renaming them on per user case. * Add a new model representing a sequence of rotations in 3D around an arbitrary number of axes. * Add many of the numpy ufunc functions as models. * Add ``BlackBody`` model. * Add ``Drude1D`` model. * Added analytical King model (KingProjectedAnalytic1D). * Added Exponential1D and Logarithmic1D models. > astropy.nddata * Add a way for technically invalid but unambiguous units in a fits header to be parsed by ``CCDData``. * ``NDData`` now only accepts WCS objects which implement either the high, or low level APE 14 WCS API. All WCS objects are converted to a high level WCS object, so ``NDData.wcs`` now always returns a high level APE 14 object. Not all array slices are valid for wcs objects, so some slicing operations which used to work may now fail. > astropy.stats * The ``biweight_location``, ``biweight_scale``, and ``biweight_midvariance`` functions now allow for the ``axis`` keyword to be a tuple of integers. * Added an ``ignore_nan`` option to the ``biweight_location``, ``biweight_scale``, and ``biweight_midvariance`` functions. * A numpy ``MaskedArray`` can now be input to the ``biweight_location``, ``biweight_scale``, and ``biweight_midvariance`` functions. * Removed the warning related to p0 in the Bayesian blocks algorithm. The caveat related to p0 is described in the docstring for ``Events``. > astropy.table * Improved the implementation of ``Table.replace_column()`` to provide a speed-up of 5 to 10 times for wide tables. The method can now accept any input which convertible to a column of the correct length, not just ``Column`` subclasses. * Improved the implementation of ``Table.add_column()`` to provide a speed-up of 2 to 10 (or more) when adding a column to tables, with increasing benefit as the number of columns increases. The method can now accept any input which is convertible to a column of the correct length, not just ``Column`` subclasses. * Changed the implementation of ``Table.add_columns()`` to use the new ``Table.add_column()`` method. In most cases the performance is similar or slightly faster to the previous implemenation. * ``MaskedColumn.data`` will now return a plain ``MaskedArray`` rather than the previous (unintended) ``masked_BaseColumn``. * Added depth-wise stacking ``dstack()`` in higher level table operation. It help will in stacking table column depth-wise. * Added a new table equality method ``values_equal()`` which allows comparison table values to another table, list, or value, and returns an element-by-element equality table. * Added new ``join_type='cartesian'`` option to the ``join`` operation. * Allow adding a table column as a list of mixin-type objects, for instance ``t['q'] = [1 * u.m, 2 * u.m]``. * Allow table ``join()`` using any sortable key column (e.g. Time), not just ndarray subclasses. A column is considered sortable if there is a ``<column>.info.get_sortable_arrays()`` method that is implemented. * Added ``Table.iterrows()`` for making row-wise iteration faster. * Allow table to be initialized with a list of dict where the dict keys are not the same in every row. The table column names are the set of all keys found in the input data, and any missing key/value pairs are turned into missing data in the table. * Prevent unnecessary ERFA warnings when indexing by ``Time`` columns. * Added support for sorting tables which contain non-mutable mixin columns (like ``SkyCoord``) for which in-place item update is not allowed. * Ensured that inserting ``np.ma.masked`` (or any other value with a mask) into a ``MaskedColumn`` causes a masked entry to be inserted. * Fixed a bug that caused an exception when initializing a ``MaskedColumn`` from another ``MaskedColumn`` that has a structured dtype. > astropy.tests * The plugin that handles the custom header in the test output has been moved to the ``pytest-astropy-header plugin`` package. `See the README at <https://github.com/astropy/pytest-astropy-header>`__ for information about using this new plugin. > astropy.time * Added a new time format ``ymdhms`` for representing times via year, month, day, hour, minute, and second attributes. * ``TimeDelta`` gained a ``to_value`` method, so that it becomes easier to use it wherever a ``Quantity`` with units of time could be used. * Made scalar ``Time`` and ``TimeDelta`` objects hashable based on JD, time scale, and location attributes. * Improved error message when bad input is used to initialize a ``Time`` or ``TimeDelta`` object and the format is specified. * Allow numeric time formats to be initialized with numpy ``longdouble``, ``Decimal`` instances, and strings. One can select just one of these using ``in_subfmt``. The output can be similarly set using ``out_subfmt``. * Introduce a new ``.to_value()`` method for ``Time`` (and adjusted the existing method for ``TimeDelta``) so that one can get values in a given ``format`` and possible ``subfmt`` (e.g., ``to_value('mjd', 'str')``. * Prevent unecessary ERFA warnings when sorting ``Time`` objects. > astropy.timeseries * Addig ``epoch_phase``, ``wrap_phase`` and ``normalize_phase`` keywords to ``TimeSeries.fold()`` to control the phase of the epoch and to return normalized phase rather than time for the folded TimeSeries. > astropy.uncertainty * ``Distribution`` was rewritten such that it deals better with subclasses. As a result, Quantity distributions now behave correctly with ``to`` methods yielding new distributions of the kind expected for the starting distribution, and ``to_value`` yielding ``NdarrayDistribution`` instances. * The ``pdf_*`` properties that were used to calculate statistical properties of ``Distrubution`` instances were changed into methods. This allows one to pass parameters such as ``ddof`` to ``pdf_std`` and ``pdf_var`` (which generally should equal 1 instead of the default 0), and reflects that these are fairly involved calcuations, not just "properties". > astropy.units * Support for unicode parsing. Currently supported superscripts are Ohm, Ångström, and the micro-sign. * Accept non-unit type annotations in @quantity_input. * For numpy 1.17 and later, the new ``__array_function__`` protocol is used to ensure that all top-level numpy functions interact properly with ``Quantity``, preserving units also in operations like ``np.concatenate``. * Add equivalencies for surface brightness units to spectral_density. > astropy.utils * ``astropy.utils.data.download_file`` and ``astropy.utils.data.get_readable_fileobj`` now provides an ``http_headers`` keyword to pass in specific request headers for the download. It also now defaults to providing ``User-Agent: Astropy`` and ``Accept: */*`` headers. The default ``User-Agent`` value can be set with a new ``astropy.data.conf.default_http_user_agent`` configuration item. * Added a new ``astropy.utils.misc.unbroadcast`` function which can be used to return the smallest array that can be broadcasted back to the initial array. * The specific IERS Earth rotation parameter table used for time and coordinate transformations can now be set, either in a context or per session, using ``astropy.utils.iers.earth_rotation_table``. * Added ``export_cache`` and ``import_cache`` to permit transporting downloaded data to machines with no Internet connection. Several new functions are available to investigate the cache contents; e.g., ``check_download_cache`` can be used to confirm that the persistent cache has not become damaged. * A new ``astropy.utils.iers.LeapSeconds`` class has been added to track leap seconds. > astropy.visualization * Added a new ``time_support`` context manager/function for making it easy to plot and format ``Time`` objects in Matplotlib. * Added support for plotting any WCS compliant with the generalized (APE 14) WCS API with WCSAxes. * Improved display of information when inspecting ``WCSAxes.coords``. * Improved error checking for the ``slices=`` argument to ``WCSAxes``. * Added support for more solar frames in WCSAxes. * Add support for one dimensional plots to ``WCSAxes``. * Add a ``get_format_unit`` to ``wcsaxes.CoordinateHelper``. * ``WCSAxes`` now, by default, sets a default label for plot axes which is the WCS physical type (and unit) for that axis. This can be disabled using the ``coords[i].set_auto_axislabel(False)`` or by explicitly setting an axis label. * Fixed the display of tick labels when plotting all sky images that have a coord_wrap less than 360. > astropy.wcs * Added a ``astropy.wcs.wcsapi.pixel_to_pixel`` function that can be used to transform pixel coordinates in one dataset with a WCS to pixel coordinates in another dataset with a different WCS. This function is designed to be efficient when the input arrays are broadcasted views of smaller arrays. * Added a ``local_partial_pixel_derivatives`` function that can be used to determine a matrix of partial derivatives of each world coordinate with respect to each pixel coordinate. * Updated wcslib to v6.4. * Improved the ``SlicedLowLevelWCS`` class in ``astropy.wcs.wcsapi`` to avoid storing chains of nested ``SlicedLowLevelWCS`` objects when applying multiple slicing operations in turn. * Added a ``wcs_info_str`` function to ``astropy.wcs.wcsapi`` to show a summary of an APE-14-compliant WCS as a string. * Added two new optional attributes to the APE 14 low-level WCS: ``pixel_axis_names`` and ``world_axis_names``. * Updated the WCS class to now correctly take and return ``Time`` objects in the high-level APE 14 API (e.g. ``pixel_to_world``. * ``SlicedLowLevelWCS`` now raises ``IndexError`` rather than ``ValueError`` on an invalid slice. * Added ``fit_wcs_from_points`` function to ``astropy.wcs.utils``. Fits a WCS object to set of matched detector/sky coordinates. * Fix various bugs in ``SlicedLowLevelWCS`` when the WCS being sliced was one dimensional. + API Changes > astropy.constants * Deprecated ``set_enabled_constants`` context manager. Use ``astropy.physical_constants`` and ``astropy.astronomical_constants``. > astropy.convolution * Removed the deprecated keyword argument ``interpolate_nan`` from ``convolve_fft``. * Removed the deprecated keyword argument ``stddev`` from ``Gaussian2DKernel``. * Deprecated and renamed ``MexicanHat1DKernel`` and ``MexicanHat2DKernel`` to ``RickerWavelet1DKernel`` and ``RickerWavelet2DKernel``. > astropy.coordinates * Removed the ``recommended_units`` attribute from Representations; it was deprecated since 3.0. * Removed the deprecated frame attribute classes, ``FrameAttribute``, ``TimeFrameAttribute``, ``QuantityFrameAttribute``, ``CartesianRepresentationFrameAttribute``; deprecated since 3.0. * Removed ``longitude`` and ``latitude`` attributes from ``EarthLocation``; deprecated since 2.0. * The ``DifferentialAttribute`` for frame classes now passes through any input to the ``allowed_classes`` if only one allowed class is specified, i.e. this now allows passing a quantity in for frame attributes that use ``DifferentialAttribute``. * Removed the deprecated ``galcen_ra`` and ``galcen_dec`` attributes from the ``Galactocentric`` frame. > astropy.extern * Remove the bundled ``six`` module. > astropy.io.ascii * Masked column handling has changed, see ``astropy.table`` entry below. > astropy.io.misc * Masked column handling has changed, see ``astropy.table`` entry below. * Removed deprecated ``usecPickle`` kwarg from ``fnunpickle`` and ``fnpickle``. > astropy.io.fits * Masked column handling has changed, see ``astropy.table`` entry below. * ``io.fits.Header`` has been made safe for subclasses for copying and slicing. As a result of this change, the private subclass ``CompImageHeader`` now always should be passed an explicit ``image_header``. * Removed the deprecated ``tolerance`` option in ``fitsdiff`` and ``io.fits.diff`` classes. * Removed deprecated keyword arguments for ``CompImageHDU``: ``compressionType``, ``tileSize``, ``hcompScale``, ``hcompSmooth``, ``quantizeLevel``. > astropy.io.votable * Changed ``pedantic`` argument to ``verify`` and change it to have three string-based options (``ignore``, ``warn``, and ``exception``) instead of just being a boolean. In addition, changed default to ``ignore``, which means that warnings will not be shown by default when loading VO tables. > astropy.modeling * Eliminates support for compound classes (but not compound instances!) * Slicing compound models more restrictive. * Shape of parameters now includes n_models as dimension. * Parameter instances now hold values instead of models. * Compound model parameters now share instance and value with constituent models. * No longer possible to assign slices of parameter values to model parameters attribute (it is possible to replace it with a complete array). * Many private attributes and methods have changed (see documentation). * Deprecated ``BlackBody1D`` model and ``blackbody_nu`` and ``blackbody_lambda`` functions. * The deprecated ``rotations.rotation_matrix_from_angle`` was removed. * Deprecated and renamed ``MexicanHat1D`` and ``MexicanHat2D`` to ``RickerWavelet1D`` and ``RickerWavelet2D``. * Deprecated ``modeling.utils.ExpressionTree``. > astropy.stats * Removed the ``iters`` keyword from sigma clipping stats functions. * Renamed the ``a`` parameter to ``data`` in biweight stat functions. * Renamed the ``a`` parameter to ``data`` in ``median_absolute_deviation``. * Renamed the ``conflevel`` keyword to ``confidence_level`` in ``poisson_conf_interval``. Usage of ``conflevel`` now issues ``AstropyDeprecationWarning``. * Renamed the ``conf`` keyword to ``confidence_level`` in ``binom_conf_interval`` and ``binned_binom_proportion``. Usage of ``conf`` now issues ``AstropyDeprecationWarning``. * Renamed the ``conf_lvl`` keyword to ``confidence_level`` in ``jackknife_stats``. Usage of ``conf_lvl`` now issues ``AstropyDeprecationWarning``. > astropy.table * The handling of masked columns in the ``Table`` class has changed in a way that may impact program behavior. Now a ``Table`` with ``masked=False`` may contain both ``Column`` and ``MaskedColumn`` objects, and adding a masked column or row to a table no longer "upgrades" the table and columns to masked. This means that tables with masked data which are read via ``Table.read()`` will now always have ``masked=False``, though specific columns will be masked as needed. Two new table properties ``has_masked_columns`` and ``has_masked_values`` were added. See the `Masking change in astropy 4.0 section within <https://docs.astropy.org/en/v4.0.x/table/masking.html>`_ for details. * Table operation functions such as ``join``, ``vstack``, ``hstack``, etc now always return a table with ``masked=False``, though the individual columns may be masked as necessary. * Changed implementation of ``Table.add_column()`` and ``Table.add_columns()`` methods. Now it is possible add any object(s) which can be converted or broadcasted to a valid column for the table. ``Table.__setitem__`` now just calls ``add_column``. * Changed default table configuration setting ``replace_warnings`` from ``['slice']`` to ``[]``. This removes the default warning when replacing a table column that is a slice of another column. * Removed the non-public method ``astropy.table.np_utils.recarray_fromrecords``. > astropy.tests * In addition to ``DeprecationWarning``, now ``FutureWarning`` and ``ImportWarning`` would also be turned into exceptions. * ``warnings_to_ignore_by_pyver`` option in ``enable_deprecations_as_exceptions()`` has changed. Please refer to API documentation. * Default settings for ``warnings_to_ignore_by_pyver`` are updated to remove very old warnings that are no longer relevant and to add a new warning caused by ``pytest-doctestplus``. > astropy.time * ``Time.get_ut1_utc`` now uses the auto-updated ``IERS_Auto`` by default, instead of the bundled ``IERS_B`` file. * Time formats that do not use ``val2`` now raise ValueError instead of silently ignoring a provided value. * Custom time formats can now accept floating-point types with extended precision. Existing time formats raise exceptions rather than discarding extended precision through conversion to ordinary floating-point. * Time formats (implemented in subclasses of ``TimeFormat``) now have their input and output routines more thoroughly validated, making it more difficult to create damaged ``Time`` objects. * The ``TimeDelta.to_value()`` method now can also take the ``format`` name as its argument, in which case the value will be calculated using the ``TimeFormat`` machinery. For this case, one can also pass a ``subfmt`` argument to retrieve the value in another form than ``float``. > astropy.timeseries * Keyword ``midpoint_epoch`` is renamed to ``epoch_time``. > astropy.uncertainty * ``Distribution`` was rewritten such that it deals better with subclasses. As a result, Quantity distributions now behave correctly with ``to`` methods yielding new distributions of the kind expected for the starting distribution, and ``to_value`` yielding ``NdarrayDistribution`` instances. > astropy.units * For consistency with ``ndarray``, scalar ``Quantity.value`` will now return a numpy scalar rather than a python one. This should help keep track of precision better, but may lead to unexpected results for the rare cases where numpy scalars behave differently than python ones (e.g., taking the square root of a negative number). * Removed the ``magnitude_zero_points`` module, which was deprecated in favour of ``astropy.units.photometric`` since 3.1. * ``EquivalentUnitsList`` now has a ``_repr_html_`` method to output a HTML table on a call to ``find_equivalent_units`` in Jupyter notebooks. > astropy.utils * ``download_file`` and related functions now accept a list of fallback sources, and they are able to update the cache at the user's request. * Allow ``astropy.utils.console.ProgressBarOrSpinner.map`` and ``.map_unordered`` to take an argument ``multiprocessing_start_method`` to control how subprocesses are started; the different methods (``fork``, ``spawn``, and ``forkserver``) have different implications in terms of security, efficiency, and behavioural anomalies. The option is useful in particular for cross-platform testing because Windows supports only ``spawn`` while Linux defaults to ``fork``. * All operations that act on the astropy download cache now take an argument ``pkgname`` that allows one to specify which package's cache to use. * Removed deprecated ``funcsigs`` and ``futures`` from ``astropy.utils.compat``. * Removed the deprecated ``astropy.utils.compat.numpy`` module. * Deprecated ``InheritDocstrings`` as it is natively supported by Sphinx 1.7 or higher. * Deprecated ``astropy.utils.timer`` module, which has been moved to ``astroquery.utils.timer`` and will be part of ``astroquery`` 0.4.0. * Deprecated ``astropy.utils.misc.set_locale`` function, as it is meant for internal use only. * The implementation of ``data_info.DataInfo`` has changed (for a considerable performance boost). Generally, this should not affect simple subclasses, but because the class now uses ``__slots__`` any attributes on the class have to be explicitly given a slot. * ``IERS`` tables now use ``nan`` to mark missing values (rather than ``1e20``). > astropy.visualization * The default ``clip`` value is now ``False`` in ``ImageNormalize``. * The default ``clip`` value is now ``False`` in ``simple_norm``. * Infinite values are now excluded when calculating limits in ``ManualInterval`` and ``MinMaxInterval``. They were already excluded in all other interval classes. + Bug Fixes > astropy.coordinates * The ``QuantityAttribute`` class now supports a None default value if a unit is specified. * When ``Representation`` classes with the same name are defined, this no longer leads to a ``ValueError``, but instead to a warning and the removal of both from the name registry (i.e., one either has to use the class itself to set, e.g., ``representation_type``, or refer to the class by its fully qualified name). > astropy.io.fits * Implemented skip (after warning) of header cards with reserved keywords in ``table_to_hdu``. * Add ``AstropyDeprecationWarning`` to ``read_table_fits`` when ``hdu=`` is selected, but does not match single present table HDU. > astropy.io.votable * Ignore BINARY2 null mask bits for string values on parsing a VOTable. In this way, the reader should never create masked values for string types. * Corrected a spurious warning issued for the ``value`` attribute of the ``<OPTION>`` element in VOTable, as well as a test that erroneously treated the warning as acceptable. > astropy.nddata * ``Cutout2D`` will now get the WCS from its first argument if that argument has with WCS property. * ``overlap_slices`` will now raise a ``ValueError`` if the input position contains any non-finite values (e.g. NaN or inf). > astropy.stats * Fixed a bug where ``bayesian_blocks`` returned a single edge. * Fixed input data type validation for ``bayesian_blocks`` to work int arrays. > astropy.table * Fix bug where adding a column consisting of a list of masked arrays was dropping the masks. * ``Quantity`` columns with custom units can now round-trip via FITS tables, as long as the custom unit is enabled during reading (otherwise, the unit will become an ``UnrecognizedUnit``). * Fix bug where string values could be truncated when inserting into a ``Column`` or ``MaskedColumn``, or when adding or inserting a row containing string values. > astropy.time * Fix bug when ``Time`` object is created with only masked elements. * Fix inaccuracy when converting between TimeDelta and datetime.timedelta. > astropy.units * Ensure that output from test functions of and comparisons between quantities can be stored into pre-allocated output arrays (using ``out=array``) > astropy.utils * For the default ``IERS_Auto`` table, which combines IERS A and B values, the IERS nutation parameters "dX_2000A" and "dY_2000A" are now also taken from the actual IERS B file rather than from the B values stored in the IERS A file. Any differences should be negligible for any practical application, but this may help exactly reproducing results. > astropy.visualization * Calling ``WCSAxes.set_axis_off()`` now correctly turns off drawing the Axes. * Fix incorrect transformation behavior in ``WCSAxes.plot_coord`` and correctly handle when input coordinates are not already in spherical representations. * Fixed ``ImageNormalize`` so that when it is intialized without ``data`` it will still use the input ``interval`` class. * Fixed ``ImageNormalize`` to handle input data with non-finite values. > astropy.wcs * Fix incorrect value returned by ``wcsapi.HighLevelWCSWrapper.axis_correlation_matrix``. * Fix NaN-masking of world coordinates when some but not all of the coordinates were flagged as invalid by WCSLIB. This occurred for example with WCS with >2 dimensions where two of the dimensions were celestial coordinates and pixel coordinates ouside of the 'sky' were converted to world coordinates - previously all world coordinates were masked even if uncorrelated with the celestial axes, but this is no longer the case. * The default WCS to celestial frame mapping for world coordinate systems that specify ``TLON`` and ``TLAT`` coordinates will now return an ITRS frame with the representation class set to ``SphericalRepresentation``. This fixes a bug that caused ``WCS.pixel_to_world`` to raise an error for such world coordinate systems. * ``FITSWCSAPIMixin`` now returns tuples not lists from ``pixel_to_world`` and ``world_to_pixel``. + Other Changes and Additions * Versions of Python <3.6 are no longer supported. * Matplotlib 2.1 and later is now required. * Versions of Numpy <1.16 are no longer supported. * Updated the bundled CFITSIO library to 3.470. See ``cextern/cfitsio/docs/changes.txt`` for additional information. * The bundled ERFA was updated to version 1.7.0. This is based on SOFA 20190722. This includes a fix to avoid precision loss for negative JDs, and also includes additional routines to allow updates to the leap-second table. * The default server for the IERS data files has been updated to reflect long-term downtime of the canonical USNO server. OBS-URL: https://build.opensuse.org/request/show/761637 OBS-URL: https://build.opensuse.org/package/show/openSUSE:Factory/python-astropy?expand=0&rev=8 |
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Todd R
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b0424dfedb | OBS-URL: https://build.opensuse.org/package/show/devel:languages:python:numeric/python-astropy?expand=0&rev=21 | ||
Tomáš Chvátal
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2e19a17d67 |
Accepting request 761537 from home:sebix:branches:devel:languages:python:numeric
Build still fails, but at least with updated requirements^^ Before merging my local changes with those in d:l:py:n it was working actually. dbm is required in the tests - Require erfa >= 1.7 because of https://github.com/astropy/astropy/issues/9654 OBS-URL: https://build.opensuse.org/request/show/761537 OBS-URL: https://build.opensuse.org/package/show/devel:languages:python:numeric/python-astropy?expand=0&rev=20 |
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Todd R
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a6cdc066b1 | OBS-URL: https://build.opensuse.org/package/show/devel:languages:python:numeric/python-astropy?expand=0&rev=19 | ||
Todd R
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b313825cf5 | OBS-URL: https://build.opensuse.org/package/show/devel:languages:python:numeric/python-astropy?expand=0&rev=18 | ||
Todd R
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8f433b58fd | OBS-URL: https://build.opensuse.org/package/show/devel:languages:python:numeric/python-astropy?expand=0&rev=17 | ||
Todd R
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6946c2b6ed | OBS-URL: https://build.opensuse.org/package/show/devel:languages:python:numeric/python-astropy?expand=0&rev=16 | ||
Todd R
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4e538da49b | OBS-URL: https://build.opensuse.org/package/show/devel:languages:python:numeric/python-astropy?expand=0&rev=15 | ||
Todd R
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66f473e2c8 | OBS-URL: https://build.opensuse.org/package/show/devel:languages:python:numeric/python-astropy?expand=0&rev=14 | ||
Dominique Leuenberger
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468d8c5f82 |
Accepting request 749999 from devel:languages:python:numeric
OBS-URL: https://build.opensuse.org/request/show/749999 OBS-URL: https://build.opensuse.org/package/show/openSUSE:Factory/python-astropy?expand=0&rev=7 |
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Todd R
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b5ce657c8a |
Accepting request 749998 from home:TheBlackCat:branches:devel:languages:python:numeric
Update to 3.2.3 OBS-URL: https://build.opensuse.org/request/show/749998 OBS-URL: https://build.opensuse.org/package/show/devel:languages:python:numeric/python-astropy?expand=0&rev=12 |
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Dominique Leuenberger
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7316d500c6 |
Accepting request 719680 from devel:languages:python:numeric
OBS-URL: https://build.opensuse.org/request/show/719680 OBS-URL: https://build.opensuse.org/package/show/openSUSE:Factory/python-astropy?expand=0&rev=6 |
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Todd R
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0c6d3394c6 |
Accepting request 719679 from home:TheBlackCat:branches:devel:languages:python:numeric
Add conflicts with perl-Data-ShowTable OBS-URL: https://build.opensuse.org/request/show/719679 OBS-URL: https://build.opensuse.org/package/show/devel:languages:python:numeric/python-astropy?expand=0&rev=10 |
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Todd R
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1063d850d3 |
Accepting request 717717 from home:TheBlackCat:branches:devel:languages:python:numeric
- Update to 3.2.1 + Bug fixes * astropy.io.fits > Avoid reporting a warning with ``BinTableHDU.from_columns`` with keywords that are not provided by the user. > Fix ``Header.fromfile`` to work on FITS files. > Fix reading of empty ``BinTableHDU`` when stored in a gzip-compressed file. * astropy.table > Fix a problem where mask was dropped when creating a ``MaskedColumn`` from a list of ``MaskedArray`` objects. * astropy.wcs > Added ``None`` to be displayed as a ``world_axis_physical_types`` in the ``WCS`` repr, as ``None`` values are now supported in ``APE14``. - Update to 3.2 + New Features * astropy.constants > Add CODATA 2018 constants but not make them default because the redefinition of SI units that will follow has not been implemented yet. * astropy.coordinates > New ``BarycentricMeanEcliptic``, ``HeliocentricTrueEcliptic`` and ``GeocentricTrueEcliptic`` frames. The ecliptic frames are no longer considered experimental. > The default time scale for epochs like 'J2000' or 'B1975' is now "tt", which is the correct one for 'J2000' and avoids leap-second warnings for epochs in the far future or past. * astropy.extern > Bundled ``six`` now emits ``AstropyDeprecationWarning``. It will be removed in 4.0. * astropy.io.ascii > IPAC tables now output data types of ``float`` instead of ``double``, or ``int`` instead of ``long``, based on the column ``dtype.itemsize``. > Update handling of MaskedColumn columns when using the 'data_mask' serialization method. This can make writing ECSV significantly faster if the data do not actually have any masked values. > Fixed a bug that caused newlines to be incorrect when writing out ASCII tables on Windows (they were ``\r\r\n`` instead of ``\r\n``). * astropy.io.misc > Implement serialization of ``TimeDelta`` in ASDF. > Implement serialization of ``EarthLocation`` in ASDF. > Implement serialization of ``SkyCoord`` in ASDF. > Support serialization of Astropy tables with mixin columns in ASDF. > No warnings when reading HDF5 files with only one table and no ``path=`` argument > The HDF5 writer will now create a default table instead of raising an exception when ``path=`` is not specified and when writing to empty/new HDF5 files. * astropy.io.fits > Optimize parsing of cards within the ``Header`` class. > Optimize the parsing of headers to get the structural keywords that are needed to find extensions. Thanks to this, getting a random HDU from a file with many extensions is much faster than before, in particular when the extension headers contain many keywords. > Change behavior of FITS undefined value in ``Header`` such that ``None`` is used in Python to represent FITS undefined when using dict interface. ``Undefined`` can also be assigned and is translated to ``None``. Previously setting a header card value to ``None`` resulted in an empty string field rather than a FITS undefined value. > Allow ``Header.fromstring`` and ``Card.fromstring`` to accept ``bytes``. * astropy.io.registry > Implement ``Table`` reader and writer for ``ASDF``. > Implement ``Table`` reader and writer methods to wrap ``pandas`` I/O methods for CSV, Fixed width format, HTML, and JSON. > Add ``help()`` and ``list_formats()`` methods to unified I/O ``read`` and ``write`` methods. For example ``Table.read.help()`` gives help on available ``Table`` read formats and ``Table.read.help('fits')`` gives detailed help on the arguments for reading FITS table file. * astropy.table > Initializing a table with ``Table(rows=...)``, if the first item is an ``OrderedDict``, now uses the column order of the first row. > Added new pprint_all() and pformat_all() methods to Table. These two new methods print the entire table by default. > Removed restriction of initializing a Table from a dict with copy=False. > Improved speed of table row access by a factor of about 2-3. Improved speed of Table len() by a factor of around 3-10 (depending on the number of columns). > Improved the Table - pandas ``DataFrame`` interface (``to_pandas()`` and ``from_pandas()``). Mixin columns like ``Time`` and ``Quantity`` can now be converted to pandas by flattening the columns as necessary to plain columns. ``Time`` and ``TimeDelta`` columns get converted to corresponding pandas date or time delta types. The ``DataFrame`` index is now handled in the conversion methods. > Added ``rename_columns`` method to rename multiple columns in one call. > Improved Table performance by reducing unnecessary calls to copy and deepcopy, especially as related to the table and column ``meta`` attributes. Changed the behavior when slicing a table (either in rows or with a list of column names) so now the sliced output gets a light (key-only) copy of ``meta`` instead of a deepcopy. Changed the ``Table.meta`` class-level descriptor so that assigning directly to ``meta``, e.g. ``tbl.meta = new_meta`` no longer does a deepcopy and instead just directly assigns the ``new_meta`` object reference. Changed Table initialization so that input ``meta`` is copied only if ``copy=True``. > Improved Table slicing performance with internal implementation changes related to column attribute access and certain input validation. > Added ``reverse`` argument to the ``sort`` and ``argsort`` methods to allow sorting in reverse order. > Improved ``Table.sort()`` performance by removing ``self[keys]`` from code which is creating deep copies of ``meta`` attribute and adding a new keyword ``names`` in ``get_index()`` to get index by using a list or tuple containing names of columns. > Expose ``represent_mixins_as_columns`` as a public function in the ``astropy.table`` subpackage. This previously-private function in the ``table.serialize`` module is used to represent mixin columns in a Table as one or more plain Column objects. * astropy.timeseries > Added a new astropy.timeseries sub-package to represent and manipulate sampled and binned time series. > The ``BoxLeastSquares`` and ``LombScargle`` classes have been moved to ``astropy.timeseries.periodograms`` from ``astropy.stats``. > Added the ability to provide absolute ``Time`` objects to the ``BoxLeastSquares`` and ``LombScargle`` periodogram classes. > Added model inspection methods (``model_parameters()``, ``design_matrix()``, and ``offset()``) to ``astropy.timeseries.LombScargle`` class . * astropy.units > ``Quantity`` overrides of ``ndarray`` methods such as ``sum``, ``min``, ``max``, which are implemented via reductions, have been removed since they are dealt with in ``Quantity.__array_ufunc__``. This should not affect subclasses, but they may consider doing similarly. Note that this does not include methods that use more complicated python code such as ``mean``, ``std`` and ``var``. * astropy.visualization > Added ``CompositeStretch``, which inherits from ``CompositeTransform`` and also ``BaseStretch`` so that it can be used with ``ImageNormalize``. > Added a ``log_a`` argument to the ``simple_norm`` method. Similar to the exposing of the ``asinh_a`` argument for ``AsinhStretch``, the new ``log_a`` argument is now exposed for ``LogStretch``. * astropy.wcs > WCSLIB was updated to v 6.2. This adds support for time-related WCS keywords (WCS Paper VII). FITS headers containing ``Time`` axis are parsed and the axis is included in the WCS object. > The ``OBSGEO`` attribute as expanded to 6 members - ``XYZLBH``. > Added a new class ``SlicedLowLevelWCS`` in ``astropy.wcs.wcsapi`` that can be used to slice any WCS that conforms to the ``BaseLowLevelWCS`` API. > Updated implementation of ``WCS.__getitem__`` and ``WCS.slice`` to now return a ``SlicedLowLevelWCS`` rather than raising an error when reducing the dimensionality of the WCS. + API Changes * astropy.coordinates > ``QuantityAttribute`` no longer has a default value for ``default``. The previous value of None was misleading as it always was an error. > The default J2000 has been changed to use be January 1, 2000 12:00 TT instead of UTC. This is more in line with convention. * astropy.io.ascii > IPAC tables now output data types of ``float`` instead of ``double``, or ``int`` instead of ``long``, based on the column ``dtype.itemsize``. * astropy.io.misc > Unit equivalencies can now be serialized to ASDF. * astropy.modeling > Composition of model classes is deprecated and will be removed in 4.0. Composition of model instances remain unaffected. * astropy.stats > The ``BoxLeastSquares`` and ``LombScargle`` classes have been moved to the ``astropy.timeseries.periodograms`` module and will now emit a deprecation warning when imported from ``astropy.stats``. * astropy.table > Converting an empty table to an array using ``as_array`` method now returns an empty array instead of ``None``. > Changed the behavior when slicing a table (either in rows or with a list of column names) so now the sliced output gets a light (key-only) copy of ``meta`` instead of a deepcopy. Changed the ``Table.meta`` class-level descriptor so that assigning directly to ``meta``, e.g. ``tbl.meta = new_meta`` no longer does a deepcopy and instead just directly assigns the ``new_meta`` object reference. Changed Table initialization so that input ``meta`` is copied only if ``copy=True``. > Added a keyword ``names`` in ``Table.as_array()``. If provided this specifies a list of column names to include for the returned structured array. * astropy.tests > Removed ``pytest_plugins`` as they are completely broken for ``pytest>=4``. > Removed the ``astropy.tests.plugins.config`` plugin and removed the ``--astropy-config-dir`` and ``--astropy-cache-dir`` options from testing. Please use caching functionality that is natively in ``pytest``. * astropy.time > The default time scale for epochs like 'J2000' or 'B1975' is now "tt", which is the correct one for 'J2000' and avoids leap-second warnings for epochs in the far future or past. * astropy.units > Unit equivalencies can now be introspected. * astropy.wcs > The ``world_to_pixel``, ``world_to_array_index*``, ``pixel_to_world*`` and ``array_index_to_world*`` methods now all consistently return scalars, arrays, or objects not wrapped in a one-element tuple/list when only one scalar, array, or object (as was previously already the case for ``WCS.pixel_to_world`` and ``WCS.array_index_to_world``). * astropy.utils > It is now possible to control the number of cores used by ``ProgressBar.map`` by passing a positive integer as the ``multiprocess`` keyword argument. Use ``True`` to use all cores. + Bug Fixes * astropy.coordinates > ``BarycentricTrueEcliptic``, ``HeliocentricTrueEcliptic`` and ``GeocentricTrueEcliptic`` now use the correct transformation (including nutation), whereas the new ``*MeanEcliptic`` classes use the nutation-free transformation. > Representations with ``float32`` coordinates can now be transformed, although the output will always be ``float64``. > Fixed bug that prevented using differentials with HCRS<->ICRS transformations. * astropy.io.ascii > Fixed a bug where an exception was raised when writing a table which includes mixin columns (e.g. a Quantity column) and the output format was specified using the ``formats`` keyword. * astropy.io.misc > Fixed bug in ASDF tag that inadvertently introduced dependency on ``pytest``. * astropy.modeling > Fixed slowness for certain compound models consisting of large numbers of multi-input models > Fixed bugs in fitting of compound models with units. * astropy.nddata > Fixed bug in reading multi-extension FITS files written by earlier versions of ``CCDData``. > Fixed two errors in the way ``CCDData`` handles FITS files with WCS in the header. Some of the WCS keywords that should have been removed from the header were not, potentially leading to FITS files with inconsistent WCS. * astropy.table > Fixed a bug when initializing from an empty list: ``Table([])`` no longer results in a crash. > Fixed a bug when initializing from an existing ``Table``. In this case the input ``meta`` argument was being ignored. Now the input ``meta``, if supplied, will be used as the ``meta`` for the new ``Table``. > Fix the conversion of bytes values to Python ``str`` with ``Table.tolist``. * astropy.time > Fixed a number of issues to ensure a consistent output type resulting from multiplication or division involving a ``TimeDelta`` instance. The output is now always a ``TimeDelta`` if the result is a time unit (like u.s or u.d), otherwise it will be a ``Quantity``. > Multiplication between two ``TimeDelta`` instances is now possible, resulting in a ``Quantity`` with units of time squared (division already correctly resulted in a dimensionless ``Quantity``). > Like for comparisons, addition, and subtraction of ``Time`` instances with with non-time instances, multiplication and division of ``TimeDelta`` instances with incompatible other instances no longer immediately raise an ``UnitsError`` or ``TypeError`` (depending on the other instance), but rather go through the regular Python mechanism of ``TimeDelta`` returning ``NotImplemented`` (which will lead to a regular ``TypeError`` unless the other instance can handle ``TimeDelta``). > Corrected small rounding errors that could cause the ``jd2`` values in ``Time`` to fall outside the range of -0.5 to 0.5. * astropy.units > Added a ``Quantity.to_string`` method to add flexibility to the string formatting of quantities. It produces unadorned or LaTeX strings, and accepts two different sets of delimiters in the latter case: ``inline`` and ``display``. > Ensure classes that mimic quantities by having a ``unit`` attribute and/or ``to`` and ``to_value`` methods can be properly used to initialize ``Quantity`` or set ``Quantity`` instance items. > Add support for ``<<`` to create logarithmic units. > Add support for the ``clip`` ufunc, which in numpy 1.17 is used to implement ``np.clip``. As part of that, remove the ``Quantity.clip`` method under numpy 1.17. > Fix parsing of numerical powers in FITS-compatible units. * astropy.wcs > Added a ``PyUnitListProxy_richcmp`` method in ``UnitListProxy`` class to enable ``WCS.wcs.cunit`` equality testing. It helps to check whether the two instances of ``WCS.wcs.cunit`` are equal or not by comparing the data members of ``UnitListProxy`` class > Fixed ``SlicedLowLevelWCS`` when ``array_shape`` is ``None``. > Do not attempt to delete repeated distortion keywords multiple times when loading distortions with ``_read_distortion_kw`` and ``_read_det2im_kw``. + Other Changes and Additions > Update bundled expat to 2.2.6. > Added instructions for uploading releases to Zenodo. > The bug fixes to the behaviour of ``TimeDelta`` for multiplcation and division, which ensure that the output is now always a ``TimeDelta`` if the result is a time unit (like u.s or u.d) and otherwise a ``Quantity``, imply that sometimes the output type will be different than it was before. > For types unrecognized by ``TimeDelta``, multiplication and division now will consistently return a ``TypeError`` if the other instance cannot handle ``TimeDelta`` (rather than ``UnitsError`` or ``TypeError`` depending on presumed abilities of the other instance). > Multiplication between two ``TimeDelta`` instances will no longer result in an ``OperandTypeError``, but rather result in a ``Quantity`` with units of time squared (division already correctly resulted in a dimensionless ``Quantity``). > Made running the tests insensitive to local user configuration when running the tests in parallel mode or directly with pytest. > Added a narrative style guide to the documentation for contributor reference. > Ensure we call numpy equality functions in a way that reduces the number of ``DeprecationWarning``. + Installation > We now require setuptools 30.3.0 or later to install the core astropy package. > We now define groups of dependencies that can be installed with pip, e.g. ``pip install astropy[all]`` (to install all optional dependencies). OBS-URL: https://build.opensuse.org/request/show/717717 OBS-URL: https://build.opensuse.org/package/show/devel:languages:python:numeric/python-astropy?expand=0&rev=9 |
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Dominique Leuenberger
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4cf55583e4 |
Accepting request 693312 from devel:languages:python:numeric
OBS-URL: https://build.opensuse.org/request/show/693312 OBS-URL: https://build.opensuse.org/package/show/openSUSE:Factory/python-astropy?expand=0&rev=5 |
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4341238985 |
Accepting request 693311 from home:mcepl:branches:devel:languages:python:numeric
- Update to 3.1.2, bug fixes - astropy.coordinates Convert the default of QuantityAttribute, thereby catching the error case case of it being set to None at attribute creation, and giving a more useful error message in the process. [#8300] - astropy.cosmology Fix elliptic analytical solution for comoving distance. Only relevant for non-flat cosmologies without radiation and Om0 > Ode0. [#8391] - astropy.modeling Fixed slowness for certain compound models consisting of large numbers of multi-input models [#8338, #8349] - astropy.visualization.wcsaxes Fix a bug that caused an error when passing an array with all values the same to contour or contourf. [#8321] Fix a bug that caused contour and contourf to return None instead of the contour set. [#8321] OBS-URL: https://build.opensuse.org/request/show/693311 OBS-URL: https://build.opensuse.org/package/show/devel:languages:python:numeric/python-astropy?expand=0&rev=7 |
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Dominique Leuenberger
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aef4a504d7 |
Accepting request 663419 from devel:languages:python:numeric
- Use pytest-astropy since it is in Factory now. - Update to version 3.1 + New Features > astropy.convolution * ``convolve`` now accepts any array-like input, not just ``numpy.ndarray`` or lists. [#7303] * ``convolve`` Now raises AstropyUserWarning if nan_treatment='interpolate' and preserve_nan=False and NaN values are present post convolution. [#8088] > astropy.coordinates * The ``SkyCoord.from_name`` constructor now has the ability to create coordinate objects by parsing object catalogue names that have embedded J-coordinates. [#7830] * The new function ``make_transform_graph_docs`` can be used to create a docstring graph from a custom ``TransformGraph`` object. [#7135] * ``KDTree`` for catalog matching is now built with sliding midpoint rule rather than standard. In code, this means setting ``compact_nodes=False`` and ``balanced_tree=False`` in ``cKDTree``. The sliding midpoint rule is much more suitable for catalog matching, and results in 1000x speedup in some cases. [#7324] * Additional information about a site loaded from the Astropy sites registry is now available in ``EarthLocation.info.meta``. [#7857] * Added a ``concatenate_representations`` function to combine coordinate representation data and any associated differentials. [#7922] * ``BaseCoordinateFrame`` will now check for a method named ``_astropy_repr_in_frame`` when constructing the string forms of attributes. Allowing any class to control how ``BaseCoordinateFrame`` represents it when it is an attribute of a frame. [#7745] * Some rarely-changed attributes of frame classes are now cached, resulting in speedups (up to 50% in some cases) when creating new scalar frame or ``SkyCoord`` objects. [#7949, #5952] * Added a ``directional_offset_by`` method to ``SkyCoord`` that computes a new coordinate given a coordinate, position angle, and angular separation [#5727] > astropy.cosmology * The default cosmology has been changed from ``WMAP9`` to ``Planck15``. [#8123] * Distance calculations with ``LambaCDM`` with no radiation (T_CMB0=0) are now 20x faster by using elliptic integrals for non-flat cases. [#7155] * Distance calculations with ``FlatLambaCDM`` with no radiation (T_CMB0=0) are now 20x faster by using the hypergeometric function solution for this special case. [#7087] * Age calculations with ``FlatLambdaCDM`` with no radiation (Tcmb0=0) are now 1000x faster by using analytic solutions instead of integrating. [#7117] > astropy.io.ascii * Latex reader now ignores ``\toprule``, ``\midrule``, and ``\bottomrule`` commands. [#7349] * Added the RST (Restructured-text) table format and the fast version of the RDB reader to the set of formats that are guessed by default. [#5578] * The read trace (used primarily for debugging) now includes guess argument sets that were skipped entirely e.g. for not supporting user-supplied kwargs. All guesses thus removed from ``filtered_guess_kwargs`` are now listed as "Disabled" at the beginning of the trace. [#5578] * Emit a warning when reading an ECSV file without specifying the ``format`` and without PyYAML installed. Previously this silently fell through to parsing as a basic format file and the file metadata was lost. [#7580] * Optionally allow writing masked columns to ECSV with the mask explicitly specified as a separate column instead of marking masked elements with "" (empty string). This allows handling the case of a masked string column with "" data rows. [#7481] > astropy.io.misc * Added support for saving all representation classes and many coordinate frames to the asdf format. [#7079] * Added support for saving models with units to the asdf format. [#7237] * Added a new ``character_as_bytes`` keyword to the HDF5 Table reading function to control whether byte string columns in the HDF5 file are left as bytes or converted to unicode. The default is to read as bytes (``character_as_bytes=True``). [#7024, #8017] > astropy.io.fits * ``HDUList.pop()`` now accepts string and tuple extension name specifications. [#7236] * Add an ``ignore_hdus`` keyword to ``FITSDiff`` to allow ignoring HDUs by NAME when diffing two FITS files [#7538] * Optionally allow writing masked columns to FITS with the mask explicitly specified as a separate column instead of using the FITS standard of certain embedded null values (``NaN`` for float, ``TNULL`` for integers). This can be used to work around limitations in the FITS standard. [#7481] * All time coordinates can now be written to and read from FITS binary tables, including those with vectorized locations. [#7430] * The ``fitsheader`` command line tool now supports a ``dfits+fitsort`` mode, and the dotted notation for keywords (e.g. ``ESO.INS.ID``). [#7240] * Fall back to reading arrays using mode='denywrite' if mode='readonly' fails when using memory-mapping. This solves cases on some platforms when the available address space was less than the file size (even when using memory mapping). [#7926] > astropy.modeling * Add a ``Multiply`` model which preserves unit through evaluate, unlike ``Scale`` which is dimensionless. [#7210] * Add a ``uses_quantity`` property to ``Model`` which allows introspection of if the ``Model`` can accept ``Quantity`` objects. [#7417] * Add a ``separability_matrix`` function which returns the correlation matrix of inputs and outputs. [#7803] * Fixed compatibility of ``JointFitter`` with the latest version of Numpy. [#7984] * Add ``prior`` and ``posterior`` constraints to modeling parameters. These are not used by any current fitters, but are provided to allow user code to experiment with Bayesian fitters. [#7558] > astropy.nddata * ``NDUncertainty`` objects now have a ``quantity`` attribute for simple conversion to quantities. [#7704] * Add a ``bitmask`` module that provides functions for manipulating bitmasks and data quality (DQ) arrays. [#7944] > astropy.stats * Add an ``astropy.stats.bls`` module with an implementation of the "box least squares" periodogram that is commonly used for discovering transiting exoplanets and eclipsing binaries. [#7391] > astropy.table * Added support for full use of ``Time`` mixin column for join, hstack, and vstack table operations. [#6888] * Added a new table index engine, ``SCEngine``, based on the Sorted Containers package. [#7574] * Add a new keyword argument ``serialize_method`` to ``Table.write`` to control how ``Time`` and ``MaskedColumn`` columns are written. [#7481] * Allow mixin columns to be used in table ``group`` and ``unique`` functions. This applies to both the key columns and the other data columns. [#7712] * Added support for stacking ``Column``, mixin column (e.g. ``Quantity``, ``Time``) or column-like objects. [#7674] * Added support for inserting a row into a Table that has ``Time`` or ``TimeDelta`` column(s). [#7897] > astropy.tests * Added an option ``--readonly`` to the test command to change the permissions on the temporary installation location to read-only. [#7598] > astropy.time * Allow array-valued ``Time`` object to be modified in place. [#6028] * Added support for missing values (masking) to the ``Time`` class. [#6028] * Added supper for a 'local' time scale (for free-running clocks, etc.), and round-tripping to the corresponding FITS time scale. [#7122] * Added `datetime.timedelta` format class for ``TimeDelta``. [#7441] * Added ``strftime`` and ``strptime`` methods to ``Time`` class. These methods are similar to those in the Python standard library `time` package and provide flexible input and output formatting. [#7323] * Added ``datetime64`` format to the ``Time`` class to support working with ``numpy.datetime64`` dtype arrays. [#7361] * Add fractional second support for ``strftime`` and ``strptime`` methods of ``Time`` class. [#7705] * Added an ``insert`` method to allow inserting one or more values into a ``Time`` or ``TimeDelta`` object. [#7897] * Remove timescale from string version of FITS format time string. The timescale is not part of the FITS standard and should not be included. This change may cause some compatibility issues for code that relies on round-tripping a FITS format string with a timescale. Strings generated from previous versions of this package are still understood but a DeprecationWarning will be issued. [#7870] > astropy.uncertainty * This sub-package was added as a "preview" (i.e. API unstable), containing the ``Distribution`` class and associated convenience functions. [#6945] > astropy.units * Add complex numbers support for ``Quantity._repr_latex_``. [#7676] * Add ``thermodynamic_temperature`` equivalency to convert between Jy/beam and "thermodynamic temperature" for cosmology. [#7054] * Add millibar unit. [#7863] * Add maggy and nanomaggy unit, as well as associated ``zero_point_flux`` equivalency. [#7891] * ``AB`` and ``ST`` are now enabled by default, and have alternate names ``ABflux`` and ``STflux``. [#7891] * Added ``littleh`` unit and associated ``with_H0`` equivalency. [#7970] > astropy.visualization * Added ``imshow_norm`` function, which combines imshow and creation of a ``ImageNormalize`` object. [#7785] > astropy.visualization.wcsaxes * Add support for setting ``set_separator(None)`` in WCSAxes to use default separators. [#7570] * Added two keyword argument options to ``CoordinateHelper.set_format_unit``: ``decimal`` can be used to specify whether to use decimal formatting for the labels (by default this is False for degrees and hours and True otherwise), and ``show_decimal_unit`` can be used to determine whether the units should be shown for decimal labels. [#7318] * Added documentation for ``transform=`` and ``coord_meta=``. [#7698] * Allow ``coord_meta=`` to optionally include ``format_unit=``. [#7848] * Add support for more rcParams related to the grid, ticks, and labels, and should work with most built-in Matplotlib styles. [#7961] * Improved rendering of outward-facing ticks. [#7961] * Add support for ``tick_params`` (which is a standard Matplotlib function/method) on both the ``WCSAxes`` class and the individual ``CoordinateHelper`` classes. Note that this is provided for compatibility with Matplotlib syntax users may be familiar with, but it is not the preferred way to change settings. Instead, methods such as ``set_ticks`` should be preferred. [#7969] * Moved the argument ``exclude_overlapping`` from ``set_ticks`` to ``set_ticklabel``. [#7969] * Added a ``pad=`` argument to ``set_ticklabel`` to provide a way to control the padding between ticks and tick labels. [#7969] * Added support for setting the tick direction in ``set_ticks`` using the ``direction=`` keyword argument. [#7969] > astropy.wcs * Map ITRS frames to terrestrial WCS coordinates. This will make it possible to use WCSAxes to make figures that combine both celestial and terrestrial features. An example is plotting the coordinates of an astronomical transient over an all- sky satellite image to illustrate the position relative to the Earth at the time of the event. The ITRS frame is identified with WCSs that use the ``TLON-`` and ``TLAT-`` coordinate types. There are several examples of WCSs where this syntax is used to describe terrestrial coordinate systems: Section 7.4.1 of `WCS in FITS "Paper II" <http://adsabs.harvard.edu/abs/2002A%26A...395.1077C>`_ and the `WCSTools documentation <http://tdc-www.harvard.edu/software/wcstools/wcstools.multiwcs.html>`_. [#6990] * Added the abstract base class for the low-level WCS API described in APE 14 (https://doi.org/10.5281/zenodo.1188875). [#7325] * Add ``WCS.contains()`` function to check if the WCS footprint contains a given sky coordinate. [#7273] * Added the abstract base class for the high-level WCS API described in APE 14 (https://doi.org/10.5281/zenodo.1188875). [#7325] * Added the high-level wrapper class for low-level WCS objects as described in APE 14 (https://doi.org/10.5281/zenodo.1188875). [#7326] * Added a new property ``WCS.has_distortion``. [#7326] * Deprecated ``_naxis1`` and ``_naxis2`` in favor of ``pixel_shape``. [#7973] * Added compatibility to wcslib version 6. [#8093] + API Changes > astropy.convolution * ``kernel`` can now be a tuple. [#7561] * Not technically an API changes, however, the docstring indicated that ``boundary=None`` was the default when actually it is ``boundary='fill'``. The docstring has been corrected, however, someone may interpret this as an API change not realizing that nothing has actually changed. [#7293] * ``interpolate_replace_nans()`` can no longer accept the keyword argument ``preserve_nan``. It is explicitly set to ``False``. [#8088] > astropy.coordinates * Fixed ``astropy.coordinates.concatenate`` to include velocity data in the concatenation. [#7922] * Changed the name of the single argument to ``Frame.realize_frame()`` from the (incorrect) ``representation_type`` to ``data``. [#7923] * Negative parallaxes passed to ``Distance()`` now raise an error by default (``allow_negative=False``), or are converted to NaN values with a warning (``allow_negative=True``). [#7988] * Negating a ``SphericalRepresentation`` object now changes the angular coordinates (by rotating 180º) instead of negating the distance. [#7988] * Creation of new frames now generally creates copies of frame attributes, rather than inconsistently either copying or making references. [#8204] * The frame class method ``is_equivalent_frame`` now checks for equality of components to determine if a frame is the same when it has frame attributes that are representations, rather than checking if they are the same object. [#8218] > astropy.io.ascii * If a fast reader is explicitly selected (e.g. ``fast_reader='force'``) and options which are incompatible with the fast reader are provided (e.g. ``quotechar='##'``) then now a ``ParameterError`` exception will be raised. [#5578] * The fast readers will now raise ``InconsistentTableError`` instead of ``CParserError`` if the number of data and header columns do not match. [#5578] * Changed a number of ``ValueError`` exceptions to ``InconsistentTableError`` in places where the exception is related to parsing a table which is inconsistent with the specified table format. Note that ``InconsistentTableError`` inherits from ``ValueError`` so no user code changes are required. [#7425] > astropy.io.fits * The ``fits.table_to_hdu()`` function will translate any column ``format`` attributes to a TDISPn format string, if possible, and store it as a TDISPn keyword in the ``HDU`` header. [#7226] > astropy.modeling * Change the order of the return values from ``FittingWithOutlierRemoval``, such that ``fitted_model`` comes first, for consistency with other fitters. For the second value, return only a boolean outlier ``mask``, instead of the previous ``MaskedArray`` (which included a copy of the input data that was both redundant and inadvertently corrupted at masked points). Return a consistent type for the second value when ``niter=0``. [#7407] * Set the minimum value for the ``bolometric_flux`` parameter of the ``BlackBody1D`` model to zero. [#7045] > astropy.nddata * Add two new uncertainty classes, ``astropy.nddata.VarianceUncertainty`` and ``astropy.nddata.InverseVariance``. [#6971] > astropy.stats * String values can now be used for the ``cenfunc`` and ``stdfunc`` keywords in the ``SigmaClip`` class and ``sigma_clip`` and ``sigma_clipped_stats`` functions. [#7478] * The ``SigmaClip`` class and ``sigma_clip`` and ``sigma_clipped_stats`` functions now have a ``masked`` keyword, which can be used to return either a masked array (default) or an ndarray with the min/max values. [#7478] * The ``iters`` keyword has been renamed (and deprecated) to ``maxiters`` in the ``SigmaClip`` class and ``sigma_clip`` and ``sigma_clipped_stats`` functions. [#7478] > astropy.table * ``Table.read()`` on a FITS binary table file will convert any TDISPn header keywords to a Python formatting string when possible, and store it in the column ``format`` attribute. [#7226] * No values provided to stack will now raise ``ValueError`` rather than ``TypeError``. [#7674] > astropy.tests * ``from astropy.tests.helper import *`` no longer includes ``quantity_allclose``. However, ``from astropy.tests.helper import quantity_allclose`` would still work. [#7381] * ``warnings_to_ignore_by_pyver`` option in ``enable_deprecations_as_exceptions()`` now takes ``None`` as key. Any deprecation message that is mapped to ``None`` will be ignored regardless of the Python version. [#7790] > astropy.time * Added the ability to use ``local`` as time scale in ``Time`` and ``TimeDelta``. [#6487] * Comparisons, addition, and subtraction of ``Time`` instances with non-time instances will now return ``NotImplemented`` rather than raise the ``Time``-specific ``OperandTypeError``. This will generally lead to a regular ``TypeError``. As a result, ``OperandTypeError`` now only occurs if the operation is between ``Time`` instances of incompatible type or scale. [#7584] > astropy.units * In ``UnitBase.compose()``, if a sequence (list|tuple) is passed in to ``units``, the default for ``include_prefix_units`` is set to `True`, so that no units get ignored. [#6957] * Negative parallaxes are now converted to NaN values when using the ``parallax`` equivalency. [#7988] > astropy.utils * ``InheritDocstrings`` now also works on class properties. [#7166] * ``diff_values()``, ``report_diff_values()``, and ``where_not_allclose()`` utility functions are moved from ``astropy.io.fits.diff``. [#7444] * ``invalidate_caches()`` has been removed from the ``astropy.utils.compat`` namespace, use it directly from ``importlib``. [#7872] > astropy.visualization * In ``ImageNormalize``, the default for ``clip`` is set to ``True``. [#7800] * Changed ``AsymmetricPercentileInterval`` and ``MinMaxInterval`` to ignore NaN values in arrays. [#7360] * Automatically default to using ``grid_type='contours'`` in WCSAxes when using a custom ``Transform`` object if the transform has no inverse. [#7847] + Performance Improvements * Reduced import time by more cautious use of the standard library. [#7647] > astropy.convolution * Major performance overhaul to ``convolve()``. [#7293] * ``convolve()``: Boundaries ``fill``, ``extend``, and ``wrap`` now use a single implementation that pads the image with the correct boundary values before convolving. The runtimes of these three were significantly skewed. They now have equivalent runtimes that are also faster than before due to performant contiguous memory access. However, this does increase the memory footprint as an entire new image array is required plus that needed for the padded region.[#7293] * ``convolve()``: Core computation ported from Cython to C. Several optimization techniques have been implemented to achieve performance gains, e.g. compiler hoisting, and vectorization, etc. Compiler optimization level ``-O2`` required for hoisting and ``-O3`` for vectorization. [#7293] * ``convolve()``: ``nan_treatment=‘interpolate’`` was slow to compute irrespective of whether any NaN values exist within the array. The input array is now checked for NaN values and interpolation is disabled if non are found. This is a significant performance boost for arrays without NaN values. [#7293] > astropy.coordinates * Sped up creating SkyCoord objects by a factor of ~2 in some cases. [#7615] * Sped up getting xyz vectors from ``CartesianRepresentation`` (which is used a lot internally). [#7638] * Sped up transformations and some representation methods by replacing python code with (compiled) ``erfa`` ufuncs. [#7639] * Sped up adding differential (velocity) data to representations by a factor of ~20, which improves the speed of frame and SkyCoord initialization. [#7924] * Refactored ``SkyCoord`` initializer to improve performance and code clarity. [#7958] * Sped up initialization of ``Longitude`` by ~40%. [#7616] > astropy.stats * The ``SigmaClip`` class and ``sigma_clip`` and ``sigma_clipped_stats`` functions are now significantly faster. [#7478] * A Cython implementation for `astropy.stats.kuiper_two` and a vectorized implementation for `astropy.stats.kuiper_false_positive_probability` have been added, speeding up both functions. [#8104] > astropy.units * Sped up creating new composite units, and raising units to some power [#7549, #7649] * Sped up Unit.to when target unit is the same as the original unit. [#7643] * Lazy-load ``scipy.special`` to shorten ``astropy.units`` import time. [#7636] > astropy.visualization * Significantly sped up drawing of contours in WCSAxes. [#7568] + Bug Fixes > astropy.convolution * Fixed bug in ``convolve_fft`` where masked input was copied with ``numpy.asarray`` instead of ``numpy.asanyarray``. ``numpy.asarray`` removes the mask subclass causing ``numpy.ma.ismasked(input)`` to fail, causing ``convolve_fft`` to ignore all masked input. [#8137] * Remove function side-effects of input data from ``convolve_fft``. It was possible for input data to remain modified if particular exceptions were raised. [#8152] > astropy.coordinates * ``EarthLocation.of_address`` now uses the OpenStreetMap geocoding API by default to retrieve coordinates, with the Google API (which now requires an API key) as an option. [#7918] * Fixed a bug that caused frame objects with NaN distances to have NaN sky positions, even if valid sky coordinates were specified. [#7988] * Fixed ``represent_as()`` to not round-trip through cartesian if the same representation class as the instance is passed in. [#7988] > astropy.io.ascii * Fixed a problem when ``guess=True`` that ``fast_reader`` options could be dropped after the first fast reader class was tried. [#5578] * Units in CDS-formatted tables are now parsed correctly by the units module. [#7348] > astropy.io.misc * Fixed bug when writing a table with masked columns to HDF5. Previously the mask was being silently dropped. If the ``serialize_meta`` option is enabled the data mask will now be written as an additional column and the masked columns will round-trip correctly. [#7481] * Fixed a bug where writing to HDF5 failed for for tables with columns of unicode strings. Now those columns are first encoded to UTF-8 and written as byte strings. [#7024, #8017] * Fixed a bug with serializing the bounding_box of models initialized with ``Quantities`` . [#8052] > astropy.io.fits * Added support for ``copy.copy`` and ``copy.deepcopy`` for ``HDUList``. [#7218] * Override ``HDUList.copy()`` to return a shallow HDUList instance. [#7218] > astropy.modeling * Fix behaviour of certain models with units, by making certain unit-related attributes readonly. [#7210] * Fixed an issue with validating a ``bounding_box`` whose items are ``Quantities``. [#8052] * Fix ``Moffat1D`` and ``Moffat2D`` derivatives. [#8108] > astropy.nddata * Fixed rounding behavior in ``overlap_slices`` for even-sized small arrays. [#7859] * Added support for pickling ``NDData`` instances that have an uncertainty. [#7383] > astropy.stats * Fix errors in ``kuiper_false_positive_probability``. [#7975] > astropy.tests * Fixing bug that prevented to run the doctests on only a single rst documentation file rather than all of them. [#8055] > astropy.time * Fix a bug when setting a ``TimeDelta`` array item with plain float value(s). This was always interpreted as a JD (day) value regardless of the ``TimeDelta`` format. [#7990] > astropy.units * To simplify fast creation of ``Quantity`` instances from arrays, one can now write ``array << unit`` (equivalent to ``Quantity(array, unit, copy=False)``). If ``array`` is already a ``Quantity``, this will convert the quantity to the requested units; in-place conversion can be done with ``quantity <<= unit``. [#7734] > astropy.utils * Fixed a bug due to which ``report_diff_values()`` was reporting incorrect number of differences when comparing two ``numpy.ndarray``. [#7470] * The download progress bar is now only displayed in terminals, to avoid polluting piped output. [#7577] * Ignore URL mirror caching when there is no internet. [#8163] > astropy.visualization * Right ascension coordinates are now shown in hours by default, and the ``set_format_unit`` method on ``CoordinateHelper`` now works correctly with angle coordinates. [#7215] + Other Changes and Additions * The documentation build now uses the Sphinx configuration from sphinx-astropy rather than from astropy-helpers. [#7139] * Versions of Numpy <1.13 are no longer supported. [#7058] * Running tests now suppresses the output of the installation stage by default, to allow easier viewing of the test results. To re-enable the output as before, use ``python setup.py test --verbose-install``. [#7512] * The ERFA functions are now wrapped in ufuncs instead of custom C code, leading to some speed improvements, and setting the stage for allowing overrides with ``__array_ufunc__``. [#7502] * Updated the bundled CFITSIO library to 3.450. See ``cextern/cfitsio/docs/changes.txt`` for additional information. [#8014] * The ``representation`` keywords in coordinate frames are now deprecated in favor of the ``representation_type`` keywords (which are less ambiguously named). [#8119] - Update to 3.0.5 * Update to 3.* is a large step, which contains these main improvements: - Full support for velocities in astropy.coordinates - Support for position updates based on source motion for SkyCoord objects - Context managers for versioned constants - Support for quantities in scipy special functions - showtable command line script - Lossless writing and reading mixin columns to HDF5 and FITS - Support for FITS time standard - FITS table performance enhancements - False alarm probabilities in astropy.stats.LombScargle - Reading large ASCII files in chunks - Astropy now only supports Python 3 - pytest plugins moved to external packages Full changelog is available at http://docs.astropy.org/en/stable/changelog.html OBS-URL: https://build.opensuse.org/request/show/663419 OBS-URL: https://build.opensuse.org/package/show/openSUSE:Factory/python-astropy?expand=0&rev=4 |
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Dominique Leuenberger
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cb0311119a |
Accepting request 562802 from devel:languages:python
OBS-URL: https://build.opensuse.org/request/show/562802 OBS-URL: https://build.opensuse.org/package/show/openSUSE:Factory/python-astropy?expand=0&rev=3 |
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Dominique Leuenberger
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99f782496b |
Accepting request 556922 from devel:languages:python
OBS-URL: https://build.opensuse.org/request/show/556922 OBS-URL: https://build.opensuse.org/package/show/openSUSE:Factory/python-astropy?expand=0&rev=2 |
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Dominique Leuenberger
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9e075a5780 |
Accepting request 506233 from devel:languages:python
OBS-URL: https://build.opensuse.org/request/show/506233 OBS-URL: https://build.opensuse.org/package/show/openSUSE:Factory/python-astropy?expand=0&rev=1 |